# Histone-based liquid biopsy discriminates between myelodysplastic syndrome and solid malignancies

**Authors:** Desislava K. Tsoneva, Diana Buzova, Salvatore Daniele Bianco, Ilina Micheva, Merlin Efraim, Nikol Daskalova, Igor Resnick, Maria Teneva, Trifon Chervenkov, Nikolay Vladimirov Conev, Rostislav Manev, Dragomir Svetozarov Stoyanov, Jan Cerveny, Tommaso Mazza, Manlio Vinciguerra

PMC · DOI: 10.1186/s13148-025-01995-w · Clinical Epigenetics · 2025-11-21

## TL;DR

This study shows that measuring specific histone proteins in blood can help distinguish between myelodysplastic syndrome and solid cancers, offering a non-invasive diagnostic tool.

## Contribution

The study introduces a novel liquid biopsy approach using circulating histone profiles to differentiate hematological and solid malignancies.

## Key findings

- Circulating histone abundance is significantly higher in cancer patients compared to healthy controls.
- MDS and solid cancers show distinct histone profiles, particularly in H2A and macroH2A1.2 levels.
- Histone complex levels correlate with age differently in healthy individuals and MDS patients.

## Abstract

Cancers can be hematological or solid, sharing many hallmarks, although their clinical behaviors are distinct. Identifying biomarkers that differentiate hematological from non-hematological malignancies could aid differential diagnosis by providing the basis for developing point-of-care diagnostic devices. In this respect, complex histone populations are secreted and detectable in biological fluids in various disease settings. To our knowledge, studies analyzing the circulating histone profile complexity by comparing healthy individuals, patients with hematological malignancies, and solid cancer patients are currently lacking.

We assessed the plasma histone signature of healthy subjects (n = 30), and of patients with myelodysplastic syndrome (MDS, n = 43), colorectal cancer (CRC, n = 39), lung cancer (non-small cell lung cancer [NSCLC, n = 15]), small cell lung cancer [SCLC, n = 4]), or breast cancer [BC, n = 16]). Principal component analysis (PCA) demonstrated the segregation of circulating histones and histone complexes between oncological and healthy patients. Individual histones (H2A, H2B, H3, H4, macroH2A1.1, and macroH2A1.2), histone dimers and nucleosomes were assayed by ImageStream(X)-advanced flow cytometry. We found general increases in circulating histone abundance in the blood of cancer patients versus healthy controls. MDS and solid cancers could be discriminated among themselves for an increased abundance of histones H2A and macroH2A1.2 (p < 0.01), and a decreased abundance of H2A/H2B/H3/H4 and H3/H4 histone complexes (p < 0.01). Moreover, macroH2A1.2 and H2A/H2B/H3/H4 levels negatively or positively correlated with age in healthy subjects versus MDS patients, respectively.

Overall, we identified circulating histone signatures able to discriminate between solid and MDS, using a rapid and non-invasive imaging technology, which may improve patient diagnosis.

The online version contains supplementary material available at 10.1186/s13148-025-01995-w.

## Linked entities

- **Proteins:** H2AC18 (H2A clustered histone 18), H2BC21 (H2B clustered histone 21), RLN3 (relaxin 3), CCDC6 (coiled-coil domain containing 6), MACROH2A1 (macroH2A.1 histone), MACROH2A1 (macroH2A.1 histone)
- **Diseases:** myelodysplastic syndrome (MONDO:0018881), colorectal cancer (MONDO:0005575), lung cancer (MONDO:0005138), non-small cell lung cancer (MONDO:0005233), small cell lung cancer (MONDO:0008433), breast cancer (MONDO:0004989)

## Full-text entities

- **Genes:** MACROH2A1 (macroH2A.1 histone) [NCBI Gene 9555] {aka H2A.y, H2A/y, H2AF12M, H2AFY, MACROH2A1.1, mH2A1}, H2AC18 (H2A clustered histone 18) [NCBI Gene 8337] {aka H2A, H2A.2, H2A/O, H2A/q, H2AFO, H2a-615}, H2BC21 (H2B clustered histone 21) [NCBI Gene 8349] {aka GL105, H2B, H2B-GL105, H2B.1, H2BE, H2BFQ}
- **Diseases:** hematological malignancies (MESH:D019337), BC (MESH:D001943), small cell lung cancer (MESH:D055752), lung cancer (MESH:D008175), non-small cell lung cancer (MESH:D002289), MDS (MESH:D009190), CRC (MESH:D015179), Cancers (MESH:D009369), SCLC (MESH:D018288)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

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Source: https://tomesphere.com/paper/PMC12639983