# Developing a Cell Culture Protocol to Induce Quiescence in Intestinal Fibroblasts Using Design of Experiments Statistical Optimization

**Authors:** Zahra Mohammadalizadeh, Katherine Bauer Estrada, Morgenne Almonte, Kaitlin C. Fogg, Ana M. Porras

PMC · DOI: 10.21203/rs.3.rs-7677632/v1 · Research Square · 2025-10-29

## TL;DR

Researchers developed a method to keep intestinal fibroblasts in a resting state in the lab, which could help study the early stages of intestinal fibrosis.

## Contribution

A new cell culture protocol using DOE optimization to maintain fibroblast quiescence was developed.

## Key findings

- Optimized conditions sustained fibroblast quiescence with reduced αSMA expression and extracellular matrix secretion.
- DOE revealed non-linear interactions between microenvironmental factors influencing fibroblast phenotype.
- The method allows for reproducible maintenance of a physiologically relevant fibroblast state.

## Abstract

In vitro studies of intestinal fibrosis are confounded by spontaneous fibroblast activation on rigid substrates, hindering the investigation of the early events that initiate fibrosis. To address this challenge, we applied a design of experiments (DOE) framework to systematically evaluate extracellular matrix proteins and soluble factors that influence fibroblast phenotype. Using CCD-18Co colonic fibroblasts, we identified optimized conditions that reproducibly sustained a quiescent state. Validation experiments confirmed that under these conditions, fibroblasts remained spindle-shaped and viable, with reduced αSMA expression and decreased extracellular matrix secretion. These findings demonstrate that DOE can reveal non-linear interactions between microenvironmental cues while enabling the development of a reproducible culture protocol to maintain fibroblast quiescence. This accessible method will allow researchers to investigate the cellular and molecular signals that trigger intestinal fibrosis in a more physiologically relevant context.

## Linked entities

- **Proteins:** ACTA1 (actin alpha 1, skeletal muscle)

## Full-text entities

- **Genes:** ACTA1 (actin alpha 1, skeletal muscle) [NCBI Gene 58] {aka ACTA, ASMA, CFTD, CFTD1, CFTDM, CMYO2A}
- **Diseases:** fibrosis (MESH:D005355)
- **Cell lines:** CCD-18Co — Homo sapiens (Human), Finite cell line (CVCL_2379)

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12636718/full.md

## References

90 references — full list in the complete paper: https://tomesphere.com/paper/PMC12636718/full.md

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Source: https://tomesphere.com/paper/PMC12636718