# Multispecific antibodies: Bioanalytics for early-stage screening and characterization of mispairing profiles

**Authors:** Catarina Melo, Sofia B. Carvalho, Maria J. Sebastião, Ricardo A. Gomes, Pedro M. F. Sousa, Patrícia Gomes-Alves

PMC · DOI: 10.1371/journal.pone.0336791 · PLOS One · 2025-11-20

## TL;DR

This paper introduces analytical methods to detect and characterize mispaired multispecific antibodies early in the development process, improving efficiency and reducing costs.

## Contribution

The novel contribution is the development of an analytical toolbox combining MS, HPLC, nDSF, and SPR for early-stage MsAb screening and characterization.

## Key findings

- MS and HPLC methods effectively assess mispairing levels in MsAbs from CHO clones.
- nDSF and SPR revealed distinct thermal and binding profiles between high and low mispairing groups.
- The methods work with both purified and clarified samples, streamlining analysis and reducing costs.

## Abstract

Multispecific antibodies (MsAbs) enable the targeting of different epitopes, representing a strategy with enhanced therapeutic potential. However, the intracellular assembly of MsAbs is complex and generates unwanted mispaired species, imposing a significant burden on downstream processing and analytical characterization, thus increasing the overall timeline and cost of bioprocess development. The establishment of analytical tools to aid in the characterization and understanding of MsAb mispairing profiles at early-stage screenings is mandatory. Here, we implemented mass spectrometry (MS) and high-performance liquid chromatography (HPLC) methods to assess mispairing levels using several Chinese Hamster Ovary (CHO) clones producing a MsAb. Results showed that both methods are suitable to be explored in early-stage screenings enabling the identification of higher quality MsAb producer clones. Importantly, not only protein A-purified but also clarified samples can be analysed by the methods established, streamlining the characterization process and reducing costs and analysis time. Moreover, we evaluated the impact of different mispairing levels on antibody functionality by biophysical tools. Nano-Differential Scanning Fluorometry (nDSF) was used to record thermal stability profiles and Surface Plasmon Resonance (SPR) to infer on the binary interactions established with three different antigens, revealing distinct profiles between groups with higher and lower mispairing levels. Our work allowed the development and implementation of a mispairing analytical toolbox, critical for early-stage screening and deeper characterization of these complex biopharmaceuticals.

## Full-text entities

- **Genes:** CD38 (CD38 molecule) [NCBI Gene 952] {aka ADPRC 1, ADPRC1, cADPR1}, CD3E (CD3 epsilon subunit of T-cell receptor complex) [NCBI Gene 916] {aka CD3epsilon, IMD18, T3E, TCRE}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, CD3D (CD3 delta subunit of T-cell receptor complex) [NCBI Gene 915] {aka CD3-DELTA, CD3DELTA, IMD19, T3D}, NPPA (natriuretic peptide A) [NCBI Gene 4878] {aka ANF, ANP, ATFB6, ATRST2, CDD, CDD-ANF}, CD28 (CD28 molecule) [NCBI Gene 940] {aka IMD123, Tp44}
- **Diseases:** inflammatory (MESH:D007249), cancer (MESH:D009369), infectious diseases (MESH:D003141), autoimmune disorders (MESH:D001327)
- **Chemicals:** HEPES (MESH:D006531), NaCl (MESH:D012965), water (MESH:D014867), PBS (MESH:D007854), oxygen (MESH:D010100), acids (MESH:D000143), tyrosine (MESH:D014443), Acetic Acid (MESH:D019342), Tween-20 (MESH:D011136), lactate (MESH:D019344), ammonia (MESH:D000641), sodium sulfate (MESH:C012036), HIC resin (-), Tm (MESH:D013932), acetonitrile (MESH:C032159), FA (MESH:C030544), glucose (MESH:D005947), tryptophan (MESH:D014364), sodium phosphate (MESH:C018279), TFA (MESH:D014269), phenylalanine (MESH:D010649)
- **Species:** Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** CHO — Cricetulus griseus (Chinese hamster), Spontaneously immortalized cell line (CVCL_0213)

## Full text

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## Figures

9 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12633938/full.md

## References

39 references — full list in the complete paper: https://tomesphere.com/paper/PMC12633938/full.md

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Source: https://tomesphere.com/paper/PMC12633938