# Multi-omics analysis reveals gut microbial and metabolic signatures in metabolic dysfunction-associated steatotic liver disease

**Authors:** Muyesaier Maimaitiyiming, Sulitanguli Maihemuti, Tangnuer Aierken, Gulizhati Abulimiti, Tuersinayi Aibaidula, Yaru Guan, Abudoukeyoumu Simayi, Maiwulan Aimaiti, Xingfu Wang, Abula Abuduaini, Yierpan Aishan

PMC · DOI: 10.3389/fmicb.2025.1666110 · Frontiers in Microbiology · 2025-11-06

## TL;DR

This study uses multi-omics to identify gut microbial and metabolic changes linked to fatty liver disease, offering potential diagnostic and therapeutic targets.

## Contribution

The study identifies novel microbial and metabolic signatures in MASLD patients using multi-omics analysis.

## Key findings

- High-fat, high-protein diets increase Parabacteroides merdae abundance and branched-chain amino acid catabolism in MASLD patients.
- Lachnospiraceae bacterium downregulation is linked to intestinal inflammation and increased appetite in MASLD patients.
- Glycerophospholipid metabolites in stool are highly correlated with MASLD progression and serve as reliable diagnostic biomarkers.

## Abstract

The high incidence rate of metabolic dysfunction-associated steatotic liver disease (MASLD) has been a big burden on public health globally.

To explore microbial and metabolic characteristics of MASLD, we performed 16S rDNA sequencing and untargeted metabolomics on 138 stool samples from MASLD patients. Through the construction of multi-omics featuremaps, we identified relevant changes in microbial and metabolic signatures and evaluated potential clinical value in MASLD.

The result showed that the high-fat, high-protein dietary pattern in MASLD patients is one of the reasons for the upregulation of Parabacteroides merdae abundance. And it can increase the branched-chain amino acid catabolic capacity in MASLD patients, thereby improving metabolic syndrome and increasing the abundance of beneficial bacteria to improve the intestinal microbiota balance. Then, the downregulation of Lachnospiraceae bacterium in MASLD patients may lead to intestinal inflammatory responses. Moreover, its increasing abundance might result in heightened appetite in MASLD patients, which leads to insulin resistance and liver damage. And the increasing in glycerophospholipid (GP) metabolites in the gut of MASLD patients is highly correlated with metabolic disorders and disease progressionassociated with hepatic fat accumulation and inflammatory responses (AUC > 0.9). Therefore, the levels of GP metabolites in the stool of MASLD patients serve as a reliable diagnostic biomarker for fatty liver and represent a potential target for the diagnosis and treatment of MASLD.

After analysis of gut microbiota and metabolites, we found that Lactobacillus johnsonii down-regulated in MASLD drives 2,6-Dichlorohydroquinone accumulation, provoking toxic buildup and accelerating disease progression.

## Linked entities

- **Chemicals:** 2,6-Dichlorohydroquinone (PubChem CID 88366)
- **Diseases:** metabolic dysfunction-associated steatotic liver disease (MONDO:0013209), metabolic syndrome (MONDO:0000816)
- **Species:** Parabacteroides merdae (taxon 46503), Lachnospiraceae bacterium (taxon 1898203), Lactobacillus johnsonii (taxon 33959)

## Full-text entities

- **Diseases:** metabolic disorders (MESH:D008659), liver damage (MESH:D056486), inflammatory (MESH:D007249), fat (MESH:D004620), metabolic syndrome (MESH:D024821), MASLD (MESH:D008107), fatty liver (MESH:D005234), insulin resistance (MESH:D007333)
- **Chemicals:** GP (MESH:D020404), branched-chain amino acid (MESH:D000597), 2,6-Dichlorohydroquinone (-)
- **Species:** Homo sapiens (human, species) [taxon 9606], Lactobacillus johnsonii (species) [taxon 33959], Parabacteroides (genus) [taxon 375288]

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC12633749/full.md

## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12633749/full.md

## References

33 references — full list in the complete paper: https://tomesphere.com/paper/PMC12633749/full.md

---
Source: https://tomesphere.com/paper/PMC12633749