# Uncovering a role for METTL13 in malignant transformation of human hematopoietic stem cells and in the progression of pediatric leukemia

**Authors:** Sabina Enlund, Chae-Eun Lim, Isabella Hoang, Sonali Joshi, Amanda Ramilo Amor, Cecilia Thomsson, Indranil Sinha, Shahrzad Shirazi Fard, Anna Nilsson, Ola Hermanson, Qingfei Jiang, Frida Holm

PMC · DOI: 10.21203/rs.3.rs-7652169/v1 · Research Square · 2025-10-23

## TL;DR

This study reveals that METTL13, an RNA methyltransferase, plays a key role in the development of pediatric leukemia by promoting cancer cell growth.

## Contribution

The study identifies METTL13 as a novel oncogenic factor in T-cell acute lymphoblastic leukemia.

## Key findings

- METTL13 is uniquely upregulated by ADAR1 overexpression in hematopoietic stem and progenitor cells.
- Knockdown of METTL13 disrupts oncogenic gene expression in hematopoietic stem and progenitor cells.
- METTL13 is essential for T-ALL cell proliferation and survival in both in vitro and in vivo models.

## Abstract

Post-transcriptional RNA modifications, such as N6-methyladenosine (m6A) methylation and adenosine to inosine (A-to-I) editing, are critical regulators of hematopoietic stem cell (HSC) self-renewal and differentiation, yet their precise contributions to malignant transformation are not fully elucidated. In this study, we uncovered the epitranscriptomic landscape caused by knockdown of genes from the methyltransferase (METTL)-family in hematopoietic stem and progenitor cells (HSPCs). We identified both converging and distinct roles of METTL3 and METTL14, known members of the m6A writer complex, as well as orphan gene METTL13. Notably, METTL13 was uniquely upregulated by adenosine deaminase acting on RNA 1 (ADAR1) overexpression, while other METTL genes were downregulated. Knockdown of METTL13 altered the expression of multiple genes involved in oncogenic development in HSPCs. Furthermore, METTL13 was associated with a high-risk profile in pediatric T-cell acute lymphoblastic leukemia (T-ALL), and functional studies confirmed that METTL13 is required for T-ALL cell proliferation and survival both in vitro and in vivo. Collectively, our results indicate a previously unrecognized, oncogenic role for METTL13 in pre-leukemic transformation and T-ALL pathogenesis.

## Linked entities

- **Genes:** METTL13 (methyltransferase 13, eEF1A N-terminus and K55) [NCBI Gene 51603], METTL3 (methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit) [NCBI Gene 56339], METTL14 (methyltransferase 14, N6-adenosine-methyltransferase non-catalytic subunit) [NCBI Gene 57721], ADAR (adenosine deaminase RNA specific) [NCBI Gene 103]
- **Diseases:** T-cell acute lymphoblastic leukemia (MONDO:0004963), leukemia (MONDO:0004355)

## Full-text entities

- **Genes:** METTL3 (methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit) [NCBI Gene 56339] {aka IME4, M6A, MT-A70, Spo8, hMETTL3}, METTL13 (methyltransferase 13, eEF1A N-terminus and K55) [NCBI Gene 51603] {aka 5630401D24Rik, CGI-01, DFNB26, DFNB26M, DFNM1, EEF1AKNMT}, ADAR (adenosine deaminase RNA specific) [NCBI Gene 103] {aka ADAR1, AGS6, DRADA, DSH, DSRAD, G1P1}, METTL14 (methyltransferase 14, N6-adenosine-methyltransferase non-catalytic subunit) [NCBI Gene 57721] {aka hMETTL14}
- **Diseases:** T-ALL (MESH:D054218), leukemic (MESH:D007938)
- **Chemicals:** m6A (MESH:C005955), N6-methyladenosine (MESH:C010223)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12633491/full.md

## References

75 references — full list in the complete paper: https://tomesphere.com/paper/PMC12633491/full.md

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Source: https://tomesphere.com/paper/PMC12633491