# A rare case of de novo 20p12.3 microdeletion syndrome in a nine-year-old female: case report and literature review

**Authors:** Hanan Aljedani, Yousef Faden, Manar Alghamdi, Alshaimaa Alzahrani, Aiman Shawli, Reem Albakistani

PMC · DOI: 10.3389/fgene.2025.1669947 · 2025-11-06

## TL;DR

A nine-year-old girl with a rare 20p12.3 microdeletion syndrome is reported, showing various physical and metabolic symptoms.

## Contribution

This case report expands the understanding of 20p12.3 microdeletion syndrome through a detailed clinical description.

## Key findings

- The patient exhibited growth faltering, seizures, and dysmorphic features linked to the 20p12.3 deletion.
- Metabolic disturbances included hypoglycemia and high anion gap metabolic acidosis.
- Low IGF1 levels persisted despite growth hormone therapy for short stature.

## Abstract

Chromosomal deletion syndromes are common worldwide. However, one rare condition that distinguishes a limited number of reported cases and variable phenotypes is 20p12.3 microdeletion syndrome. This case report describes a nine-year-old girl diagnosed with 20p12.3 microdeletion syndrome. Genetic testing revealed a deletion spanning 3.5 Mb and containing 31 genes. The patient presented with a range of clinical manifestations, including growth faltering, short stature, controlled seizure disorder, dysmorphic features, and metabolic disturbances. Regarding dysmorphic features, she presented with malar hypoplasia, a high arched palate, microstomia, long philtrum, proptosis, and retrognathia. Metabolic disturbances were primarily manifested as episodes of hypoglycemia with a high anion gap metabolic acidosis. Despite receiving growth hormone therapy as management for short stature, the patient exhibited low levels of insulin-like growth factor 1 (IGF1). This case report adds to the limited body of knowledge regarding 20p12.3 microdeletion syndrome.

## Linked entities

- **Diseases:** 20p12.3 microdeletion syndrome (MONDO:0016841), seizure disorder (MONDO:0005027)

## Full-text entities

- **Genes:** IGF1 (insulin like growth factor 1) [NCBI Gene 3479] {aka IGF, IGF-I, IGFI, MGF}, GH1 (growth hormone 1) [NCBI Gene 2688] {aka GH, GH-N, GHB5, GHN, IGHD1A, IGHD1B}
- **Diseases:** high arched palate (MESH:D007569), seizure disorder (MESH:D004827), growth faltering (MESH:D006130), malar hypoplasia (MESH:C000721289), metabolic acidosis (MESH:D000138), long philtrum (MESH:D000094024), retrognathia (MESH:D063173), microstomia (MESH:D008865), dysmorphic features (MESH:D000013), deletion (MESH:D002872), hypoglycemia (MESH:D007003), Metabolic disturbances (MESH:D024821), proptosis (MESH:D005094)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Figures

1 figure with captions in the complete paper: https://tomesphere.com/paper/PMC12631077/full.md

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Source: https://tomesphere.com/paper/PMC12631077