# Membrane Proteins ClcB, PtsI, and YcaM Mediate the Bactericidal Effects of Colistin in Escherichia coli

**Authors:** Rhys Donafee, Mohammad Radi, Douglas Bruce Kell, Jesus Enrique Salcedo-Sora

PMC · DOI: 10.1021/acsinfecdis.5c00566 · ACS Infectious Diseases · 2025-10-30

## TL;DR

This study identifies three membrane proteins in E. coli that play a role in the bactericidal effects of the antibiotic colistin.

## Contribution

The first evidence that ClcB, PtsI, and YcaM are involved in the cytotoxic pathway of polymyxin action in Gram-negative bacteria.

## Key findings

- Knockout of ClcB, PtsI, and YcaM affects E. coli susceptibility to colistin.
- The proteins are part of the cytotoxic pathway following polymyxin membrane intercalation.
- Findings were validated using growth assays, cytotoxic tests, and in vivo models.

## Abstract

Bacteria can be killed
very effectively by targeting their first
line of protection. The cell membranes (outer and inner membranes)
of Gram-negative bacteria are directly targeted by antibiotics, such
as polymyxins, via electrostatic interactions with their lipopolysaccharide
(LPS) fraction. The downstream effectspreceding the cell deathof
the disruptions of the bacterial membranes upon the intercalation
of these antibiotics are unknown. By screening a set of E. coli membrane protein knockouts, the absence of
three membrane transporters was shown to influence the susceptibility
to colistin. Their involvement was corroborated with growth assays
on gain-of-function strains, cytotoxic assays, and in vivo infections in an invertebrate animal model. This is the first-time
evidence that the disruption caused to membrane proteins, such as
the chloride channel ClcB, the sugar transport system component PtsI
and the hypothetical glutamate:GABA antiporter YcaM, is part of the
cytotoxic pathway that follows or is concomitant to the electrostatic
intercalations of polymyxins with the Gram-negative bacterial membrane.

## Linked entities

- **Genes:** ClC-b (Chloride channel-b) [NCBI Gene 36381], ptsI (phosphoenolpyruvate-protein phosphotransferase) [NCBI Gene 884783], ycaM (transporter) [NCBI Gene 917722]
- **Proteins:** ClC-b (Chloride channel-b), ptsI (phosphoenolpyruvate-protein phosphotransferase), ycaM (transporter)
- **Chemicals:** colistin (PubChem CID 5311054), polymyxins (PubChem CID 139589158)
- **Species:** Escherichia coli (taxon 562)

## Full-text entities

- **Diseases:** infections (MESH:D007239), cytotoxic (MESH:D064420)
- **Chemicals:** LPS (MESH:D008070), sugar (MESH:D000073893)
- **Species:** Escherichia coli (E. coli, species) [taxon 562]

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12624714/full.md

## References

57 references — full list in the complete paper: https://tomesphere.com/paper/PMC12624714/full.md

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Source: https://tomesphere.com/paper/PMC12624714