# Molecular simulations meet personalized medicine: The mechanism of action of CLC-5 antiporter and the origin of Dent's disease

**Authors:** Veronica Macaluso, Carles Pérez, Robert Soliva, Yvonne Westermaier, Lucía Díaz, Miłosz Wieczór, Modesto Orozco

PMC · DOI: 10.1093/pnasnexus/pgaf353 · PNAS Nexus · 2025-11-04

## TL;DR

This paper explores how a genetic mutation in the CLC-5 protein causes Dent's disease, using molecular simulations to understand its mechanism and potential treatments.

## Contribution

The study reveals the molecular mechanism of CLC-5 transport and how a specific deletion causes Dent's disease, using advanced simulations.

## Key findings

- CLC-5 transports chloride ions and protons in opposite directions through specific structural changes.
- The 523ΔVal deletion disrupts CLC-5 function despite minimal structural changes, explaining Dent's disease pathology.
- Molecular simulations can uncover disease mechanisms and guide personalized medicine approaches.

## Abstract

ClC-5 is a Cl−/H+ antiporter crucial for the homeostasis of the entire organism, and whose functional deficiencies cause pathologies such as Dent's disease, a rare genetic disorder that can have lethal consequences. While the clinical aspects of the pathology are known, its molecular basis is elusive, which hampers the development of potential therapies. We present here a systematic study, where we explore the mechanism of transport of ClC-5, deciphering the choreography of structural changes required for the transport of chloride ions and protons in opposing directions. Once the mechanism is determined, we explore how the 523ΔVal deletion linked to Dent's disease hampers the correct functioning of the transporter, despite having a very minor structural impact. Our study highlights how state-of-the-art simulation methods can shed light on the origin of rare diseases and explore targets for personalized medicine.

## Linked entities

- **Genes:** CLCN5 (Cl-/H+ antiporter 5) [NCBI Gene 1184]
- **Proteins:** CLCN5 (Cl-/H+ antiporter 5)
- **Diseases:** Dent's disease (MONDO:0015612)

## Full-text entities

- **Genes:** CLCN5 (Cl-/H+ antiporter 5) [NCBI Gene 1184] {aka CLC5, CLCK2, ClC-5, DENT1, DENTS, NPHL1}
- **Diseases:** genetic disorder (MESH:D030342), Dent's disease (MESH:D057973)
- **Chemicals:** chloride (MESH:D002712), Cl- (MESH:D002713), H+ antiporter (-)

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12624513/full.md

## References

60 references — full list in the complete paper: https://tomesphere.com/paper/PMC12624513/full.md

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Source: https://tomesphere.com/paper/PMC12624513