# Deciphering oligomeric proanthocyanidins’ dual osteoprotective mechanisms at single-cell resolution: NR4A1-mediated PTGS2 suppression and β-catenin-Runx2 activation

**Authors:** Li Huang, Yuwei Sun, Yi Zheng, Shicheng Qiu, Jianping Zheng, Chunhan Sun, Mingwei Chen, Shaowei Zheng, Yirong Zeng

PMC · DOI: 10.3389/fimmu.2025.1679987 · Frontiers in Immunology · 2025-11-04

## TL;DR

This study uses single-cell RNA sequencing to uncover how oligomeric proanthocyanidins treat osteoporosis by targeting specific bone cells and regulating multiple pathways.

## Contribution

The study reveals a dual mechanism of OPC in osteoporosis treatment via NR4A1-mediated PTGS2 suppression and β-catenin-Runx2 activation in specific MSC subtypes.

## Key findings

- OPC targets C2 NR4A1+ MSCs to suppress PTGS2 expression through NR4A1 inhibition.
- OPC activates β-catenin-Runx2 signaling to promote osteogenesis and inhibit osteoclastogenesis.
- The study identifies C2 NR4A1+ MSCs as key mediators in osteoporosis pathology.

## Abstract

Osteoporosis (OP), as a systemic bone disorder, has a complex pathogenesis and faces significant challenges in clinical treatment. Oligomeric proanthocyanidin (OPC), a type of natural polyphenolic flavonoid compound, demonstrates outstanding therapeutic potential due to its excellent antioxidant and anti-inflammatory properties and good safety. The breakthrough advances in single-cell RNA sequencing (scRNA-seq) technology have provided a powerful research tool for elucidating the multitarget mechanisms of OPC in the treatment of OP.

This study first screened the active components of OPC leveraging the TCMSP database. The protein–protein interaction network of OPC target proteins was generated through the STRING database, and visual analysis was accomplished using the Cytoscape software. The ClusterProfiler R package and ClueGO plugin were employed for functional enrichment analysis and network visualization. At the same time, scRNA-seq data from the GEO database were integrated, and cell-type identification was attained using the Seurat tool. The differentiation trajectories of subtypes were inferred using Monocle and Slingshot software. The cell communication network was analyzed using CellChat.

This study utilized scRNA-seq to identify C2 NR4A1+ MSCs with distinct metabolic features and differentiation potential in the bone microenvironment during the early stage of OP, namely, osteopenia. The natural component OPC can precisely target this subtype and exert therapeutic effects through two mechanisms: inhibiting the transcriptional activity of NR4A1 to suppress the expression of PTGS2 in MSCs and simultaneously activating the β-catenin-dependent NR4A1–Runx2 signaling axis to promote osteogenesis and inhibit osteoclastogenesis. These findings establish a new therapeutic paradigm of “targeting cell subtypes–multipathway regulation,” providing an important basis for the development of novel anti-OP drugs.

Our research integrated multilevel approaches, including single-cell transcriptomics, network pharmacology, cellular experiments, and animal models, to systematically reveal the dual mechanism of OPC in treating OP. This discovery not only established C2 NR4A1+ MSCs as key mediators in the pathological process of OP but also clarified the molecular mechanism of multitarget synergy of natural active compounds in restoring bone homeostasis, providing a theoretical basis and practical guidance for the development of new OP therapies.

## Linked entities

- **Genes:** NR4A1 (nuclear receptor subfamily 4 group A member 1) [NCBI Gene 3164], PTGS2 (prostaglandin-endoperoxide synthase 2) [NCBI Gene 5743], ctnnb1.S (catenin beta 1 S homeolog) [NCBI Gene 380441], RUNX2 (RUNX family transcription factor 2) [NCBI Gene 860]
- **Chemicals:** OPC (PubChem CID 112005)
- **Diseases:** osteoporosis (MONDO:0005298)

## Full-text entities

- **Genes:** RUNX2 (RUNX family transcription factor 2) [NCBI Gene 860] {aka AML3, CBF-alpha-1, CBFA1, CCD, CCD1, CLCD}, NR4A1 (nuclear receptor subfamily 4 group A member 1) [NCBI Gene 3164] {aka GFRP1, HMR, N10, NAK-1, NGFIB, NP10}, PTGS2 (prostaglandin-endoperoxide synthase 2) [NCBI Gene 5743] {aka COX-2, COX2, GRIPGHS, PGG/HS, PGHS-2, PHS-2}, CTNNB1 (catenin beta 1) [NCBI Gene 1499] {aka CTNNB, EVR7, MRD19, NEDSDV, armadillo}
- **Diseases:** OP (MESH:D010024), bone disorder (MESH:D001847), osteopenia (MESH:D001851), inflammatory (MESH:D007249)
- **Chemicals:** proanthocyanidins (MESH:D044945), OPC (-), flavonoid (MESH:D005419)

## Full text

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## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12623368/full.md

## References

84 references — full list in the complete paper: https://tomesphere.com/paper/PMC12623368/full.md

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Source: https://tomesphere.com/paper/PMC12623368