# Response of soil fungal community structure and co-occurrence network features on plantations of limestone mountains along habitat specialization gradient

**Authors:** Zhenlu Qiu, Jin Liu, Ting Pan, Ziwen Wang, Yanru Shen, Xueting Wang, Jing Shu

PMC · DOI: 10.3389/fmicb.2025.1691167 · Frontiers in Microbiology · 2025-11-03

## TL;DR

This study explores how different forest types in limestone mountains affect soil fungal communities and their networks, revealing that broad-leaved forests best support fungal diversity and stability.

## Contribution

The study introduces a novel habitat-specialization framework to analyze fungal community assembly and network structures in different forest types during ecological restoration.

## Key findings

- Habitat-specialists were more numerous and abundant than generalists, with distinct patterns across forest types.
- Broad-leaved forests showed the highest fungal diversity and influenced network modularity and connectivity.
- Soil properties and tree species composition significantly shaped fungal community structures and network features.

## Abstract

This study elucidated how different plantation types in limestone mountains shape the community structure and co-occurrence networks of soil fungal habitatspecialization groups, offering a habitat-adaptation perspective on the assembly mechanisms of soil microbial diversity during ecological restoration.

In this study, we grouped soil fungi from plantations of coniferous forests (CF), mixed forests (MF) and broad-leaved forests (BF) into habitat-generalists, specialists and opportunists based on niche breadth, and examined how forest type shapes their diversity, community structure and co-occurrence networks along a habitat-specialization gradient.

We found that: (1) The number and abundance of habitat-specialists significantly exceeded those of generalists. Habitat-generalists exhibited the highest abundance and ecological niche width in BF, whereas habitat-specialists were most abundant in CF. (2) The diversity index was the highest in BF across all habitat specialization groups. Differences in community structure among forest types increased with habitat specialization, and the composition of dominant tree species significantly influenced the community structure of each group. Soil properties primarily affected the community structure of habitat generalists and opportunists between BF and other forest types. (3) The network structure of habitat specialists exhibited high modularity, while habitat generalists formed independent subnetworks with more fragile structures. CF and BF exhibited strong intra-module connections and high modularity, whereas MF displayed high intermodule connectivity, which reduced their modularity. Both within-module (Zi) and between-module connectivity (Pi) of increased with habitat specialization and the proportion of broadleaved tree species.

We concluded that broad-leaved plantations, by increasing soil environmental heterogeneity, promoted the diversity of habitat-specialists and enhancing their network hub roles, representing the optimal strategy for optimizing below-ground biodiversity and stability in limestone mountain forest restoration.

## Full-text entities

- **Diseases:** CF (MESH:D007733), BF (MESH:D006952), fungal (MESH:D009181)
- **Chemicals:** N (MESH:D009584), C (MESH:D002244), DBH (MESH:C056578), AP (-), Potassium (MESH:D011188), P (MESH:D010758), potassium dichromate (MESH:D011192), molybdenum (MESH:D008982), potassium chloride (MESH:D011189), antimony (MESH:D000965), water (MESH:D014867), agarose (MESH:D012685), ammonium acetate (MESH:C018824)
- **Species:** Pinus tabuliformis (southern Chinese pine, species) [taxon 88731], Pinus densiflora (Japanese red pine, species) [taxon 77912], Crohivirus B (no rank) [taxon 2169854], Prunus persica (peach, species) [taxon 3760], Populus davidiana (species) [taxon 266767], Robinia pseudoacacia (black locust, species) [taxon 35938], Diospyros lotus (date-plum, species) [taxon 55363], Platycladus orientalis (species) [taxon 58046], Grewia biloba (species) [taxon 93770]
- **Cell lines:** SY — Homo sapiens (Human), Lung small cell carcinoma, Cancer cell line (CVCL_7028), CHH — Oncorhynchus keta (Chum salmon), Spontaneously immortalized cell line (CVCL_4143)

## Full text

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## Figures

17 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12620503/full.md

## References

75 references — full list in the complete paper: https://tomesphere.com/paper/PMC12620503/full.md

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Source: https://tomesphere.com/paper/PMC12620503