# Disrupting ribulose-5-phosphate metabolic flux enhances riboflavin production in Escherichia coli BL21(DE3)

**Authors:** Junhui Ying, Jin Lu, Qiming Liu, Yingjie Pan, Xianfeng Bao, Junjun Yin, Bing Fu

PMC · DOI: 10.1371/journal.pone.0336576 · 2025-11-14

## TL;DR

Scientists improved the production of riboflavin (vitamin B2) in E. coli by modifying its metabolism.

## Contribution

A new metabolic engineering strategy was developed to significantly increase riboflavin production in Escherichia coli BL21(DE3).

## Key findings

- Disrupting genes pfkA and edd-eda increased riboflavin production by 51.27% and 65.81%, respectively.
- Disrupting gutQ increased production by 19.65%, while kdsD disruption had no significant effect.
- The final engineered strain achieved a 287.35% increase in riboflavin titer compared to the starting strain.

## Abstract

Riboflavin (vitamin B2) is an essential water-soluble vitamin. To increase its production in a previously engineered strain, R203, we employed metabolic engineering strategies to improve the supply of ribulose-5-phosphate, a key precursor. Disruption of the genes pfkA and edd-eda, which are aimed at promoting ribulose-5-phosphate generation, increased riboflavin production by 51.27% and 65.81%, respectively. To minimize the consumption of ribulose-5-phosphate, we disrupted kdsD and gutQ, both of which encode D-arabinose 5-phosphate isomerase. Only the disruption of gutQ was effective, increasing production by 19.65%, whereas kdsD disruption had no significant effect. Furthermore, disrupting yajO and inserting the pgl gene increased production by 8.65% and 18.80%, respectively. In contrast, inserting ribM, which encodes a riboflavin transporter from Streptomyces davawensis, reduced production. The final engineered strain, R19, achieved a riboflavin titer of 2,546.35 ± 159.65 mg/L, representing a 287.35% increase over that of the starting strain. This study provides an effective strategy for high-level riboflavin production in recombinant Escherichia coli BL21(DE3) strains.

## Linked entities

- **Genes:** PFKM (phosphofructokinase, muscle) [NCBI Gene 5213], kdsD (D-arabinose 5-phosphate isomerase) [NCBI Gene 916080], gutQ (D-arabinose 5-phosphate isomerase GutQ) [NCBI Gene 947587], yajO (2-carboxybenzaldehyde reductase) [NCBI Gene 914575], SDHD (succinate dehydrogenase complex subunit D) [NCBI Gene 6392]
- **Chemicals:** riboflavin (PubChem CID 1072), ribulose-5-phosphate (PubChem CID 439184), D-arabinose 5-phosphate (PubChem CID 188324)
- **Species:** Escherichia coli BL21(DE3) (taxon 469008)

## Full-text entities

- **Chemicals:** Riboflavin (MESH:D012256), ribulose-5-phosphate (MESH:C031524), ribM (-)
- **Species:** Streptomyces davaonensis (species) [taxon 348043], Escherichia coli BL21(DE3) (strain) [taxon 469008]

## Figures

11 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12617950/full.md

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Source: https://tomesphere.com/paper/PMC12617950