# RNA-based therapies for neurodevelopmental disorders: innovative tools for molecular correction

**Authors:** Denise Drongitis, Lucia Verrillo, Alberto de Bellis, Maria Giuseppina Miano

PMC · DOI: 10.3389/fmolb.2025.1681647 · 2025-10-31

## TL;DR

RNA-based therapies offer new ways to treat neurodevelopmental disorders by targeting specific genetic mutations.

## Contribution

This review highlights novel RNA-based molecules for treating neurodevelopmental disorders with specific genetic causes.

## Key findings

- RNA-based molecules like ASOs and SINEUPs show promise in correcting genetic mutations in neurodevelopmental disorders.
- These therapies target conditions like Fragile X syndrome and Angelman syndrome with limited treatment options.
- RNA technologies are being explored for complex disorders like autism and epileptic encephalopathy.

## Abstract

Modulation of RNA and protein expression to restore or normalize neuronal function has emerged as a powerful therapeutic strategy for neurodevelopmental disorders (NDDs) tailoring individual genetic mutations causing intellectual disability (ID), or autism spectrum disorder (ASD), or developmental epileptic encephalopathy (DEE). In recent years, diverse classes of RNA-based molecules have been developed with therapeutic potential, including antisense oligonucleotides (ASOs), oligonucleotides targeting natural antisense transcripts (antagoNATs), Short Interspersed Nuclear Element UP-regulating RNAs (SINEUPs), interfering RNAs (RNAi), Exon-Specific engineering U1 small nuclear RNAs (ExSpeU1s), and small-activating RNA (saRNA) This review highlights the promising advances of these RNA-based therapeutics in addressing syndromic ID, such as Fragile X syndrome, MECP2 duplication syndrome, FOXG1-gene related Rett syndrome and Angelman syndrome, which are characterized by well-defined genetic mutations with limited treatment options. Moreover, ASD-related condition linked to mutations in CHD8 is under investigation, extending the therapeutic landscape to complex behavioral and cognitive disorders. In the same way, several DEEs caused by mutations in CDKL5, DNM1, KCNT1, SCN1A, SCN2A, SCN8A, and UBA5 genes, which present severe pharmaco-resistant epilepsy, are increasingly becoming targets for RNA molecules that aim to restore neuronal excitability and network function. Together, these findings underscore the expanding therapeutic landscape enabled by RNA technologies, offering unprecedented specificity and flexibility for gene-targeted interventions in NDDs. As the field of RNA medicine continues to evolve across genomics and neuroscience, we aim to provide a resource for researchers and clinicians on promising innovative tools for molecular correction.

## Linked entities

- **Genes:** CHD8 (chromodomain helicase DNA binding protein 8) [NCBI Gene 57680], CDKL5 (cyclin dependent kinase like 5) [NCBI Gene 6792], DNM1 (dynamin 1) [NCBI Gene 1759], KCNT1 (potassium sodium-activated channel subfamily T member 1) [NCBI Gene 57582], SCN1A (sodium voltage-gated channel alpha subunit 1) [NCBI Gene 6323], SCN2A (sodium voltage-gated channel alpha subunit 2) [NCBI Gene 6326], SCN8A (sodium voltage-gated channel alpha subunit 8) [NCBI Gene 6334], UBA5 (ubiquitin like modifier activating enzyme 5) [NCBI Gene 79876], FOXG1 (forkhead box G1) [NCBI Gene 2290], MECP2 (methyl-CpG binding protein 2) [NCBI Gene 4204]
- **Diseases:** intellectual disability (MONDO:0001071), autism spectrum disorder (MONDO:0005258), Fragile X syndrome (MONDO:0010383), MECP2 duplication syndrome (MONDO:0010283), Angelman syndrome (MONDO:0007113)

## Full-text entities

- **Genes:** SCN8A (sodium voltage-gated channel alpha subunit 8) [NCBI Gene 6334] {aka BFIS5, CERIII, CIAT, DEE13, EIEE13, MED}, UBA5 (ubiquitin like modifier activating enzyme 5) [NCBI Gene 79876] {aka DEE44, EIEE44, SCAR24, THIFP1, UBE1DC1}, CDKL5 (cyclin dependent kinase like 5) [NCBI Gene 6792] {aka CFAP247, DEE2, EIEE2, ISSX, STK9}, FOXG1 (forkhead box G1) [NCBI Gene 2290] {aka BF1, BF2, FHKL3, FKH2, FKHL1, FKHL2}, SCN1A (sodium voltage-gated channel alpha subunit 1) [NCBI Gene 6323] {aka DEE6, DEE6A, DEE6B, DRVT, EIEE6, FEB3}, KCNT1 (potassium sodium-activated channel subfamily T member 1) [NCBI Gene 57582] {aka DEE14, EIEE14, ENFL5, KCa4.1, KNa1.1, SLACK}, SCN2A (sodium voltage-gated channel alpha subunit 2) [NCBI Gene 6326] {aka BFIC3, BFIS3, BFNIS, DEE11, EA9, EIEE11}, CHD8 (chromodomain helicase DNA binding protein 8) [NCBI Gene 57680] {aka AUTS18, HELSNF1, IDDAM}, DNM1 (dynamin 1) [NCBI Gene 1759] {aka DEE31, DEE31A, DEE31B, DNM, EIEE31}
- **Diseases:** NDDs (MESH:D002658), ASD (MESH:D000067877), DEE (MESH:C562695), Fragile X syndrome (MESH:D005600), Rett syndrome (MESH:D015518), resistant epilepsy (MESH:D000069279), Angelman syndrome (MESH:D017204), MECP2 duplication syndrome (MESH:C537723), ID (MESH:D008607), behavioral and cognitive disorders (MESH:D003072)

## Figures

1 figure with captions in the complete paper: https://tomesphere.com/paper/PMC12615191/full.md

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Source: https://tomesphere.com/paper/PMC12615191