# miR-199a functions downstream of MeCP2 in neurons of MECP2 duplication syndrome models

**Authors:** Yuichi Akaba, Satoru Takahashi, Shota Adachi, Masatoshi Nishimura, Keiichiro Suzuki, Hideyuki Nakashima, Kinichi Nakashima, Ryutaro Kira, Pin Fee Chong, Yasunari Sakai, Yohei Hayashi, Itaru Kushima, Daisuke Mori, Yuko Arioka, Hiroki Okumura, Atsuo Nakayama, Seiji Mizuno, Toshiyuki Yamamoto, Fumitaka Osakada, Norio Ozaki, Keita Tsujimura

PMC · DOI: 10.1016/j.isci.2025.113789 · iScience · 2025-10-16

## TL;DR

This study shows that miR-199a plays a key role in the abnormal brain cell development caused by MECP2 duplication syndrome, and blocking it can reverse some of the damage.

## Contribution

The study identifies miR-199a as a novel downstream mediator of MeCP2 in MECP2 duplication syndrome.

## Key findings

- Blocking miR-199a-5p improved soma size and mTOR activity in MDS neurons.
- Inhibiting miR-199a-3p normalized dendritic outgrowth in MDS neurons.
- miR-199a-2 knockout mice showed reduced synaptic and mTOR abnormalities in MDS models.

## Abstract

Duplication of the methyl-CpG-binding protein 2 (MECP2) gene causes MECP2 duplication syndrome (MDS), a severe neurodevelopmental disorder with an unclear pathology. We previously showed that MeCP2 promotes the processing of specific microRNAs (miRNAs), including miR-199a, to regulate neuronal functions. Here, we demonstrate that neurons derived from MDS model mice and patient-induced pluripotent stem cells (iPSCs) exhibit morphological abnormalities, such as abnormal dendrite outgrowth, enlarged soma size, increased glutamatergic synapse density, and hyperactivation of the mechanistic target of rapamycin (mTOR) signaling. MeCP2 overexpression increased miR-199a production in both models. Blocking miR-199a-5p improved soma size and mTOR activity, while inhibiting miR-199a-3p normalized dendritic outgrowth. Crossing MDS model mice with miR-199a-2 knockout mice ameliorated synaptic and mTOR abnormalities. Human MDS cortical organoids exhibited reduced neuronal activity, which was reversed by suppressing miR-199a-5p. These findings identify miR-199a as a key downstream mediator of MeCP2 in MDS, providing new insights into its molecular pathology.

•miR-199a mediates MeCP2-induced abnormal neuronal morphology in MDS models•Inhibition of miR-199a rescues dendritic and soma abnormalities in MDS neurons•miR-199a inhibition reduces mTOR activity in MDS models in vitro and in vivo

miR-199a mediates MeCP2-induced abnormal neuronal morphology in MDS models

Inhibition of miR-199a rescues dendritic and soma abnormalities in MDS neurons

miR-199a inhibition reduces mTOR activity in MDS models in vitro and in vivo

Natural sciences; Biological sciences; Neuroscience

## Linked entities

- **Genes:** MECP2 (methyl-CpG binding protein 2) [NCBI Gene 4204], MIR199A (microRNA mir-199a) [NCBI Gene 100314809], MIR199A2 (microRNA 199a-2) [NCBI Gene 406977]
- **Proteins:** MECP2 (methyl-CpG binding protein 2)
- **Diseases:** MECP2 duplication syndrome (MONDO:0010283), MDS (MONDO:0018881)

## Full-text entities

- **Genes:** Mir199a-2 (microRNA 199a-2) [NCBI Gene 723821] {aka Mirn199a-2, mir-199a-2}, Mtor (mechanistic target of rapamycin kinase) [NCBI Gene 56717] {aka 2610315D21Rik, FRAP, FRAP2, Frap1, RAFT1, RAPT1}, Mecp2 (methyl CpG binding protein 2) [NCBI Gene 17257] {aka 1500041B07Rik, D630021H01Rik, Mbd5, WBP10}
- **Diseases:** neurodevelopmental disorder (MESH:D002658), MDS (MESH:C563602)
- **Species:** Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090]

## Full text

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## Figures

12 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12613072/full.md

## References

70 references — full list in the complete paper: https://tomesphere.com/paper/PMC12613072/full.md

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Source: https://tomesphere.com/paper/PMC12613072