# Case Report: Novel IRF2BP2 variant in a Japanese patient with impaired B-cell differentiation, Th1 polarization, and systemic immune dysregulation

**Authors:** Yushiro Endo, Tomohiro Koga, Shota Kurushima, Takuya Tomokawa, Hiroyuki Mishima, Koh-ichiro Yoshiura, Tadashi Matsumoto, Atsushi Kawakami

PMC · DOI: 10.3389/fimmu.2025.1662899 · Frontiers in Immunology · 2025-10-30

## TL;DR

A new IRF2BP2 gene variant is found in a patient with immune issues, showing how it affects B-cell and T-cell function.

## Contribution

A novel IRF2BP2 variant is identified, expanding the clinical and immunological spectrum of IRF2BP2-related immunodeficiency.

## Key findings

- The patient had a novel IRF2BP2 variant (c.1663T>A; p.Cys555Ser) associated with B-cell differentiation and Th1 polarization.
- Immunophenotyping showed naïve B-cell predominance and impaired plasmablast differentiation.
- Th1 polarization was observed in CD4+ T cells with no significant changes in Th17 or Treg populations.

## Abstract

Interferon regulatory factor 2 binding protein 2 (IRF2BP2) is a transcriptional corepressor involved in immune regulation via IRF1-mediated interferon signaling inhibition. Pathogenic IRF2BP2 variants are associated with common variable immunodeficiency, primarily affecting B-cell maturation. We report a 47-year-old female with immunodeficiency and systemic inflammation, including primary biliary cholangitis and unclassified arthritis, who was detected to carry a novel heterozygous de novo missense variant in the IRF2BP2 gene (c.1663T>A; p. Cys555Ser). Immunophenotyping revealed naïve B-cell predominance, with a loss of memory B cells and impaired plasmablast differentiation, indicating late-stage disturbed B-cell differentiation/maturation. CD4+ T cells demonstrated Th1 polarization with reduced Th2 subsets, whereas Th17 and Treg populations exhibited no obvious changes. Considering that IRF2BP2 negatively regulates STAT1-driven transcription via IRF1 suppression, the observed Th1 polarization suggests improved STAT1 activity. This case underscores the combined humoral and cellular immune dysregulation due to IRF2BP2 dysfunction, expanding the clinical spectrum to encompass inflammatory phenotype.

## Linked entities

- **Genes:** IRF2BP2 (interferon regulatory factor 2 binding protein 2) [NCBI Gene 359948]
- **Diseases:** common variable immunodeficiency (MONDO:0015517), primary biliary cholangitis (MONDO:0005388)

## Full-text entities

- **Genes:** IRF1 (interferon regulatory factor 1) [NCBI Gene 3659] {aka IMD117, IRF-1, MAR}, STAT1 (signal transducer and activator of transcription 1) [NCBI Gene 6772] {aka CANDF7, IMD31A, IMD31B, IMD31C, ISGF-3, STAT91}, IRF2BP2 (interferon regulatory factor 2 binding protein 2) [NCBI Gene 359948] {aka CVID14, LRIR2}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}
- **Diseases:** immune dysregulation (OMIM:614878), inflammatory (MESH:D007249), unclassified arthritis (MESH:D001168), immunodeficiency (MESH:D007153), primary biliary cholangitis (MESH:D008105)
- **Species:** Homo sapiens (human, species) [taxon 9606]
- **Mutations:** c.1663T>A, p. Cys555Ser

## Full text

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## Figures

3 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12611837/full.md

## References

20 references — full list in the complete paper: https://tomesphere.com/paper/PMC12611837/full.md

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Source: https://tomesphere.com/paper/PMC12611837