# Genome-wide association study reveals candidate loci for resistance to anthracnose in blueberry

## TL;DR

This study identifies genetic loci linked to anthracnose resistance in blueberries, offering insights for breeding and disease management.

## Contribution

The study identifies multiple genetic loci and defense-related proteins associated with anthracnose resistance in blueberries.

## Key findings

- Moderate heritability (∼0.5) for anthracnose resistance was observed in blueberries.
- Seven chromosomes (2, 3, 5, 6, 9, 10, and 12) contain loci linked to anthracnose resistance.
- Candidate genes include serine/threonine protein kinases and E3 ubiquitin ligases involved in plant defense.

## Abstract

Anthracnose, caused by Colletotrichum gloeosporioides, poses a significant threat to blueberries, necessitating a deeper understanding of the genetic mechanisms underlying resistance to develop efficient breeding strategies. Here, we conducted a genome-wide association study on 355 advanced selections of southern highbush blueberry from the University of Florida Blueberry Breeding and Genomics Program. Visual scores and image analyses were used for assessing disease severity. The population was genotyped using Capture-Seq, detecting 38,379 single nucleotide polymorphisms. The study revealed a moderate narrow-sense heritability estimate (∼0.5) for anthracnose resistance in blueberries. Minor additive loci contributing to anthracnose resistance were identified on chromosomes 2, 3, 5, 6, 9, 10, and 12, using 2 different phenotyping approaches. Visual and image-based phenotyping captured complementary aspects of anthracnose resistance, identifying distinct, non-overlapping SNP associations. Candidate gene mining flanking significant associations unveiled key defense-related proteins, such as serine/threonine protein kinases, pentatricopeptide repeat-containing proteins, E3 ubiquitin ligases that have been well-known for their roles in plant defense signaling pathways. Our findings highlight the complex and quantitative resistance mechanism for anthracnose in blueberry, providing insights for breeding strategies and sustainable disease management.