# Novel Dual-Coenzyme Specificity and Thermostability of Malate Dehydrogenase Identified in the Cyanobacterium Microcystis aeruginosa PCC7806

**Authors:** Yadong Ge, Yifan Wu, Bo Zhou, Xiaojie Wu, Yu Ren, Jialin Zhu, Yali Ge

PMC · DOI: 10.3390/ijms262110313 · 2025-10-23

## TL;DR

This study identifies a unique malate dehydrogenase in a cyanobacterium that works with both NAD+ and NADP+ and is highly stable at high temperatures.

## Contribution

The discovery of a dual-coenzyme specific and thermostable MDH in Microcystis aeruginosa provides new insights into the evolution of coenzyme specificity.

## Key findings

- MaMDH shows dual-coenzyme specificity with a slight preference for NAD+.
- The enzyme retains over 90% activity after 20 minutes at 70°C.
- Structure-guided mutagenesis shifted cofactor preference from NAD+ to NADP+.

## Abstract

Malate dehydrogenase (MDH) is a key energy metabolic enzyme with distinct coenzyme specificity for either NAD+ or NADP+ in all domains of life. Here, we characterize a novel MDH from the bloom-forming cyanobacterium Microcystis aeruginosa PCC7806 (MaMDH), which displays dual-coenzyme specificity with comparable efficiency for both NAD+ and NADP+, albeit with a slight preference for NAD+. MaMDH exists as a 72.1 kDa homodimer with a subunit mass of 36.2 kDa in solution. Kinetic measurements yielded Km values of 33.140 μM for NAD+ and 113.200 μM for NADP+, with a kcat ratio (NAD⁺/NADP⁺) of 3.64. The enzyme exhibited optimal activity at pH 8.0 and 40 °C, along with notable thermostability, retaining over 90% activity after incubation at 70 °C for 20 min. Through structure-guided mutagenesis of the predicted coenzyme-binding motif, we shifted MaMDH cofactor preference from NAD+ toward NADP+, supporting the hypothesis that dual-specificity MDHs may represent evolutionary intermediates in the emergence of NADP+-dependent chloroplast MDHs. This study provides new insights into the molecular evolution mechanisms of coenzyme specificity within the MDH family.

## Linked entities

- **Proteins:** MDH (malate dehydrogenase)
- **Chemicals:** NAD+ (PubChem CID 5892), NADP+ (PubChem CID 5885)
- **Species:** Microcystis aeruginosa PCC 7806 (taxon 267872)

## Full-text entities

- **Genes:** ME1 (malic enzyme 1) [NCBI Gene 4199] {aka HUMNDME, MES}, MDH2 (malate dehydrogenase 2) [NCBI Gene 4191] {aka DEE51, EIEE51, M-MDH, MDH, MGC:3559, MOR1}, MDH1 (malate dehydrogenase 1) [NCBI Gene 4190] {aka DEE88, EIEE88, HEL-S-32, KAR, MDH-s, MDHA}
- **Chemicals:** NAD+ (MESH:D009243), NADP+ (MESH:D009249)
- **Species:** Cyanobacterium (genus) [taxon 102234], Microcystis aeruginosa PCC 7806 (strain) [taxon 267872]

## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12609799/full.md

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Source: https://tomesphere.com/paper/PMC12609799