# A Coffin-Siris syndrome–associated mutation modeled in Caenorhabditis elegans affects multiple developmental processes

**Authors:** Marissa Baccas, Jun Liu

PMC · DOI: 10.1093/g3journal/jkaf194 · G3: Genes | Genomes | Genetics · 2025-08-20

## TL;DR

A mutation linked to Coffin-Siris syndrome in humans was studied in C. elegans, revealing effects on development and gene expression.

## Contribution

A CSS-associated SOX11 mutation was modeled in C. elegans, showing loss-of-function effects and potential for studying craniofacial defects.

## Key findings

- The sem-2[Y160C] mutation in C. elegans causes embryonic and larval lethality, egg-laying defects, and reduced brood size.
- sem-2[Y160C] animals show reduced hlh-8/Twist expression, linked to craniofacial disorders in humans.
- The CSS-associated mutation resembles loss-of-function SEM-2 phenotypes, suggesting a recessive, haploinsufficient mechanism.

## Abstract

Coffin-Siris syndrome (CSS) is a rare human genetic disorder that is characterized by developmental delay, fifth digit abnormalities, and craniofacial defects. Heterozygous mutations in 2 SoxC proteins, SOX4 and SOX11, are associated with this disorder. Caenorhabditis elegans has a single SoxC protein, SEM-2, which is essential for development. In this study, we use C. elegans as a model system to explore the molecular effects of one CSS-associated SOX11 mutation, Y116C, on SoxC protein function in vivo. The equivalent amino acid of SOX11 Y116 is SEM-2 Y160, a residue in the C-terminal tail of the highly conserved DNA-binding domain. Homozygous, but not heterozygous, sem-2[Y160C] animals exhibit a high rate of embryonic and larval lethality, egg-laying defects, reduced brood size, bivulval phenotype and a low penetrance of hermaphrodite tail abnormalities. Additionally, sem-2[Y160C] animals have reduced expression of hlh-8/Twist, whose human counterparts, when mutated, are known to be associated with craniofacial disorders. All the phenotypes observed in sem-2[Y160C] animals resemble SEM-2 loss-of-function phenotypes, suggesting that SOX11[Y116C] is a loss-of-function, recessive mutation that likely causes defects due to haploinsufficiency. Our work suggests that using C. elegans as a model system to analyze the molecular effects of point mutations associated with craniofacial defects has the potential for unraveling the underlying mechanisms.

## Linked entities

- **Genes:** SOX4 (SRY-box transcription factor 4) [NCBI Gene 6659], SOX11 (SRY-box transcription factor 11) [NCBI Gene 6664], SEMA3G (semaphorin 3G) [NCBI Gene 56920], hlh-8 (Twist-related protein) [NCBI Gene 181069]
- **Proteins:** soxC (HMG transcription factor SoxC), SEMA3G (semaphorin 3G), TWIST1 (twist family bHLH transcription factor 1)
- **Diseases:** Coffin-Siris syndrome (MONDO:0007617)
- **Species:** Caenorhabditis elegans (taxon 6239), Homo sapiens (taxon 9606)

## Full-text entities

- **Genes:** hlh-8 (Twist-related protein) [NCBI Gene 181069], sox-4 (Sex-determining region Y protein) [NCBI Gene 182547], sem-2 (Transcription factor sem-2) [NCBI Gene 172162]
- **Diseases:** lethality (MESH:C536057), CSS (MESH:C536436), developmental delay (MESH:D002658), craniofacial defects (MESH:D019465), tail abnormalities (MESH:C562903), genetic disorder (MESH:D030342)
- **Species:** Homo sapiens (human, species) [taxon 9606], C. elegans [taxon 328850]
- **Mutations:** Y116, Y160, Y116C, Y160C

## Full text

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## Figures

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## References

60 references — full list in the complete paper: https://tomesphere.com/paper/PMC12608072/full.md

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Source: https://tomesphere.com/paper/PMC12608072