# Analysis of MSX1, RYK, NFκB p65, and CCL4 Proteins and MSX2, RYK, and PTX3 Genes in Human Cleft Lip Tissue

**Authors:** Mārtiņš Vaivads, Alise Elizabete Rone, Māra Pilmane

PMC · DOI: 10.3390/ijms262110599 · International Journal of Molecular Sciences · 2025-10-30

## TL;DR

This study investigates the roles of specific genes and proteins in human cleft lip tissue to better understand the biological processes involved in cleft lip development.

## Contribution

The study provides new insights into the expression patterns of MSX1, RYK, NFκB p65, CCL4, MSX2, and PTX3 in cleft lip tissue compared to controls.

## Key findings

- MSX1, NFκB p65, and CCL4 proteins were decreased in cleft lip connective tissue and endothelium.
- RYK protein was decreased only in cleft connective tissue.
- MSX2 and RYK gene-signal-containing cells increased in cleft lip tissue.

## Abstract

Human cleft lip morphopathogenesis is a complicated process involving multiple genes and proteins. Certain factors like muscle segment homeobox 1 (MSX1) and 2 (MSX2) as well as receptor-like tyrosine kinase (RYK) are important during lip embryogenesis, while others like nuclear factor kappa-B protein 65 (NFκB p65), C-C motif chemokine ligand 4 (CCL4), and pentraxin 3 (PTX3) regulate local inflammation and immunomodulation. The exact role of these factors in human cleft morphopathogenesis remains uncertain and limits the opportunity to improve cleft treatment and possible prophylaxis. Immunohistochemistry (IHC) for MSX1, RYK, NFκB p65, and CCL4 proteins and chromogenic in situ hybridization (CISH) for MSX2, RYK, and PTX3 genes were used to analyze postnatal human cleft lip tissue (15 patients) and control tissue (6 patients). The semiquantitative counting method was used to assess factor/gene-signal-containing cells. Statistical analysis was performed. IHC findings showed decreased MSX1, NFκB p65, and CCL4 proteins in cleft lip connective tissue and endothelium, while RYK protein was decreased only in cleft connective tissue. CISH showed increases in MSX2 and RYK gene-signal-containing cells in cleft lip tissue while PTX3 did not differ from controls. Multiple statistically significant correlations were calculated. The findings are discussed in detail to determine their significance in cleft lip morphopathogenesis.

## Linked entities

- **Genes:** MSX1 (msh homeobox 1) [NCBI Gene 4487], MSX2 (msh homeobox 2) [NCBI Gene 4488], RYK (receptor like tyrosine kinase) [NCBI Gene 6259], CCL4 (C-C motif chemokine ligand 4) [NCBI Gene 6351], PTX3 (pentraxin 3) [NCBI Gene 5806]
- **Proteins:** MSX1 (msh homeobox 1), RYK (receptor like tyrosine kinase), CCL4 (C-C motif chemokine ligand 4)
- **Diseases:** cleft lip (MONDO:0004747)

## Full-text entities

- **Genes:** MSX1 (msh homeobox 1) [NCBI Gene 4487] {aka ECTD3, HOX7, HYD1, STHAG1}, PTX3 (pentraxin 3) [NCBI Gene 5806] {aka TNFAIP5, TSG-14}, MSX2 (msh homeobox 2) [NCBI Gene 4488] {aka CRS2, FPP, HOX8, MSH, PFM, PFM1}, RYK (receptor like tyrosine kinase) [NCBI Gene 6259] {aka D3S3195, JTK5, JTK5A, RYK1}, RELA (RELA proto-oncogene, NF-kB subunit) [NCBI Gene 5970] {aka AIF3BL3, CMCU, NFKB3, p65}, CCL4 (C-C motif chemokine ligand 4) [NCBI Gene 6351] {aka ACT2, AT744.1, G-26, HC21, LAG-1, LAG1}
- **Diseases:** inflammation (MESH:D007249), Cleft Lip (MESH:D002971), lip (MESH:D008047)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

9 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12607811/full.md

## References

81 references — full list in the complete paper: https://tomesphere.com/paper/PMC12607811/full.md

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Source: https://tomesphere.com/paper/PMC12607811