# Functions of TIP60/NuA4 Complex Subunits in Cell Differentiation

**Authors:** Fatemeh Hashemi, Aida Nourozi, Mojtaba Shaban Loushab, Karl Riabowol

PMC · DOI: 10.3390/cells14211720 · Cells · 2025-11-01

## TL;DR

The TIP60/NuA4 complex plays a key role in cell differentiation by remodeling chromatin, with each subunit contributing to this process in distinct yet overlapping ways.

## Contribution

This review integrates mechanistic and functional insights to show how TIP60/NuA4 acts as a central epigenetic hub during differentiation.

## Key findings

- TIP60/NuA4 subunits cooperate to remodel chromatin during lineage-specific differentiation.
- Disruption of different subunits leads to similar differentiation outcomes due to overlapping functions.
- The complex influences gene expression through acetylation and histone variant exchange.

## Abstract

What are the main findings?
TIP60/NuA4 functions as an integrated complex—catalytic (TIP60/KAT5), scaffold/ATPase (EP400/EPC1/TRRAP), and reader subunits (ING3, YEATS4, MBTD1, BAF53A/MRG15) cooperate to remodel chromatin during lineage-specific differentiation.Individual subunits have distinct yet convergent roles across neurogenesis, myogenesis, adipogenesis, hematopoiesis, and germ-cell development; viewing the whole complex explains overlapping differentiation phenotypes.

TIP60/NuA4 functions as an integrated complex—catalytic (TIP60/KAT5), scaffold/ATPase (EP400/EPC1/TRRAP), and reader subunits (ING3, YEATS4, MBTD1, BAF53A/MRG15) cooperate to remodel chromatin during lineage-specific differentiation.

Individual subunits have distinct yet convergent roles across neurogenesis, myogenesis, adipogenesis, hematopoiesis, and germ-cell development; viewing the whole complex explains overlapping differentiation phenotypes.

What are the implications of the main findings?
A whole-complex perspective clarifies why disruption of different subunits yields similar outcomes and helps separate complex-dependent from subunit-specific effects.TIP60/NuA4 emerges as a central epigenetic hub with translational relevance for disorders of development, regeneration, and disease.

A whole-complex perspective clarifies why disruption of different subunits yields similar outcomes and helps separate complex-dependent from subunit-specific effects.

TIP60/NuA4 emerges as a central epigenetic hub with translational relevance for disorders of development, regeneration, and disease.

The TIP60/NuA4 complex is a large, multifunctional histone acetyltransferase assembly of ~1.7 megadaltons, composed of 17–20 subunits, which plays a central role in epigenetic regulation. Through recognition of H3K4me3 by the ING3 reader, TIP60/NuA4 is recruited to sites of active transcription, where it remodels chromatin to regulate gene expression. Its activities include histone acetylation, histone variant exchange, transcriptional co-activation, and regulation of the cell cycle and apoptosis. In this review, we examine how altered subunit levels or mutations impact the chromatin structure and transcriptional activity, and how these changes influence differentiation across diverse cell types. We emphasize the molecular mechanisms by which TIP60/NuA4 shapes lineage specification, including histone H2A and H4 acetylation by the KAT5 catalytic subunit, H2A.Z incorporation by EP400, and interactions with transcription factors such as MyoD, PPARγ, and Myc. By integrating mechanistic and functional insights, we highlight how TIP60/NuA4 acts as a central epigenetic hub in differentiation and contributes to proper developmental transitions.

## Linked entities

- **Genes:** KAT5 (lysine acetyltransferase 5) [NCBI Gene 10524], KAT5 (lysine acetyltransferase 5) [NCBI Gene 10524], EP400 (E1A binding protein p400) [NCBI Gene 57634], EPC1 (enhancer of polycomb 1) [NCBI Gene 80314], TRRAP (transformation/transcription domain associated protein) [NCBI Gene 8295], ING3 (inhibitor of growth family member 3) [NCBI Gene 54556], YEATS4 (YEATS domain containing 4) [NCBI Gene 8089], MBTD1 (mbt domain containing 1) [NCBI Gene 54799], ACTL6A (actin like 6A) [NCBI Gene 86], MORF4L1 (mortality factor 4 like 1) [NCBI Gene 10933], MYOD1 (myogenic differentiation 1) [NCBI Gene 4654], PPARG (peroxisome proliferator activated receptor gamma) [NCBI Gene 5468], MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 4609]

## Full-text entities

- **Genes:** KAT5 (lysine acetyltransferase 5) [NCBI Gene 10524] {aka ESA1, HTATIP, HTATIP1, NEDFASB, PLIP, TIP}, MYOD1 (myogenic differentiation 1) [NCBI Gene 4654] {aka CMYO17, CMYP17, MYF3, MYOD, MYODRIF, PUM}, PPARG (peroxisome proliferator activated receptor gamma) [NCBI Gene 5468] {aka CIMT1, FPLD3, GLM1, NR1C3, PPARG1, PPARG2}, ING3 (inhibitor of growth family member 3) [NCBI Gene 54556] {aka Eaf4, MEAF4, p47ING3}, MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 4609] {aka MRTL, MYCC, bHLHe39, c-Myc}, EP400 (E1A binding protein p400) [NCBI Gene 57634] {aka CAGH32, P400, TNRC12}, H2AZ1 (H2A.Z variant histone 1) [NCBI Gene 3015] {aka H2A.Z-1, H2A.z, H2A/z, H2AFZ, H2AZ}

## Full text

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## Figures

3 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12607386/full.md

## References

134 references — full list in the complete paper: https://tomesphere.com/paper/PMC12607386/full.md

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Source: https://tomesphere.com/paper/PMC12607386