# APE1 mediates chemoresistance in esophageal squamous cell carcinoma by remodeling the immunosuppressive microenvironment

**Authors:** Han Gao, Junji Rao, He Xiao, Xunjie Kuang, Yong Wang, Yujing Yao, Yuxin Yang, Mengxia Li, Xiuyong Liao, Dong Wang

PMC · DOI: 10.3389/fimmu.2025.1689468 · Frontiers in Immunology · 2025-10-29

## TL;DR

High APE1 levels in esophageal cancer are linked to worse survival after chemotherapy and a more immunosuppressive tumor environment.

## Contribution

APE1 is identified as a novel prognostic biomarker in ESCC, associated with immunosuppressive tumor microenvironment features like Tregs and CAFs.

## Key findings

- High APE1 expression correlates with worse 5-year overall and disease-free survival in ESCC patients.
- High APE1 is linked to increased infiltration of FOXP3+ regulatory T cells and cancer-associated fibroblasts.
- APE1 is an independent prognostic factor confirmed through multiple validation methods.

## Abstract

Squamous cell carcinoma of the esophagus (ESCC) has poor prognosis after surgery and adjuvant chemotherapy. Biomarkers predicting treatment efficacy are urgently needed. This study investigated apurinic/apyrimidinic endonuclease 1 (APE1), a key DNA repair enzyme, as a prognostic biomarker in ESCC patients receiving postoperative chemotherapy.

To assess the relationship between APE1 expression and survival outcomes post-adjuvant chemotherapy. 115 ESCC patients receiving surgery and platinum-based chemotherapy were retrospectively enrolled. APE1 expression (low, medium, high) was determined by immunohistochemistry (IHC). Furthermore, external validation was performed using a tissue microarray cohort of 110 post-chemotherapy ESCC patients and the GES5325 dataset. Survival was analyzed using Kaplan-Meier and Cox regression. The tumor immune microenvironment was characterized by multiplex immunofluorescence (mIF).

High APE1 expression correlated significantly with advanced T stage (p=0.005) and neural invasion (p=0.036). The high-expression group had significantly worse 5-year OS (27% vs. 91.4%) and DFS (14.3% vs. 55.3%) than the low-expression group (p<0.001), confirmed in public databases. Multivariate analysis identified APE1 expression (DFS: HR=4.600, 95% CI 1.285-16.466; OS: HR=16.001, 95% CI 4.826-53.061) and clinical stage as independent prognostic factors. Additionally, external validation was carried out using tissue microarrays and the GEO database to confirm the reliability. mIF analysis revealed significantly increased infiltration of FOXP3+ regulatory T cells (Treg) and cancer-associated fibroblasts (CAFs) in the APE1-high group.

High APE1 expression is an independent predictor of poor prognosis in ESCC patients receiving postoperative chemotherapy, associated with Treg and CAFs-mediated immunosuppression. APE1 serves as a prognostic biomarker linked to immunosuppression, enabling personalized adjuvant therapy.

Illustration comparing APE1 expression in esophageal squamous cell carcinoma (ESCC). The left panel shows low APE1 with distinct tumor and immune cells. The right panel shows high APE1 with tumor-regulatory (Treg) and cancer-associated fibroblasts (CAF), indicating increased cellular disruption.

## Linked entities

- **Genes:** APEX1 (apurinic/apyrimidinic endodeoxyribonuclease 1) [NCBI Gene 328]
- **Proteins:** FOXP3 (forkhead box P3)
- **Chemicals:** platinum (PubChem CID 23939)
- **Diseases:** esophageal squamous cell carcinoma (MONDO:0005580), ESCC (MONDO:0005580)

## Full-text entities

- **Genes:** FOXP3 (forkhead box P3) [NCBI Gene 50943] {aka AIID, DIETER, IPEX, JM2, PIDX, XPID}, APEX1 (apurinic/apyrimidinic endodeoxyribonuclease 1) [NCBI Gene 328] {aka APE, APE1, APEN, APEX, APX, HAP1}
- **Diseases:** ESCC (MESH:D004938), esophageal squamous cell carcinoma (MESH:D000077277), Squamous cell carcinoma of the esophagus (MESH:D002294), tumor (MESH:D009369)
- **Chemicals:** platinum (MESH:D010984)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12605184/full.md

## References

29 references — full list in the complete paper: https://tomesphere.com/paper/PMC12605184/full.md

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Source: https://tomesphere.com/paper/PMC12605184