# Quantifying cancer- and drug-induced changes in Shannon information capacity of RTK signaling

**Authors:** Paweł Nałęcz-Jawecki, Lee Roth, Frederic Grabowski, Sunnie Li, Marek Kochańczyk, Lukasz J. Bugaj, Tomasz Lipniacki

PMC · DOI: 10.1038/s41598-025-23075-y · Scientific Reports · 2025-11-10

## TL;DR

This study measures how cancer and drugs affect how cells process information through signaling pathways using information theory.

## Contribution

The study introduces information capacity as a novel metric to quantify signaling pathway dysfunction in cancer and drug responses.

## Key findings

- STE-1 cancer cells had an RTK/ERK information rate of less than 0.5 bit/hour compared to 7 bit/hour in BEAS-2B cells.
- Oncogene inhibition increased STE-1 information rate to 3 bit/hour.
- The RTK/calcineurin pathway had higher channel capacity than RTK/ERK in BEAS-2B cells.

## Abstract

Cancer can result from abnormal regulation of cells by their environment, potentially because cancer cells may misperceive environmental cues. However, the magnitude to which the oncogenic state alters cellular information processing has not been quantified. Here, we apply pseudorandom pulsatile optogenetic stimulation, live-cell imaging, and information theory to compare the information capacity of receptor tyrosine kinase (RTK) signaling pathways in EML4-ALK-driven lung cancer (STE-1) and in non-transformed (BEAS-2B) cells. The average information rate through RTK/ERK signaling in STE-1 cells was less than 0.5 bit/hour, compared to 7 bit/hour in BEAS-2B cells, but increased to 3 bit/hour after oncogene inhibition. Information was transmitted by 50–70% of cells, whose channel capacity (maximum information rate) was estimated through in silico protocol optimization. In BEAS-2B cells, channel capacity of the parallel RTK/calcineurin pathway surpassed that of the RTK/ERK pathway. This study highlights information capacity as a sensitive metric for identifying disease-associated dysfunction and evaluating the effects of targeted interventions.

The online version contains supplementary material available at 10.1038/s41598-025-23075-y.

## Linked entities

- **Genes:** EML4 (EMAP like 4) [NCBI Gene 27436], ALK (ALK receptor tyrosine kinase) [NCBI Gene 238], EPHB2 (EPH receptor B2) [NCBI Gene 2048]
- **Proteins:** Tie (Tie-like receptor tyrosine kinase), ppp3ca.S (protein phosphatase 3, catalytic subunit, alpha isozyme S homeolog)
- **Diseases:** lung cancer (MONDO:0005138)

## Full-text entities

- **Genes:** ALK (ALK receptor tyrosine kinase) [NCBI Gene 238] {aka ALK1, CD246, NBLST3}, EPHB2 (EPH receptor B2) [NCBI Gene 2048] {aka BDPLT22, CAPB, DRT, EK5, EPHT3, ERK}, EML4 (EMAP like 4) [NCBI Gene 27436] {aka C2orf2, ELP120, EMAP-4, EMAPL4, ROPP120}
- **Diseases:** lung cancer (MESH:D008175), Cancer (MESH:D009369)
- **Cell lines:** BEAS-2B — Homo sapiens (Human), Transformed cell line (CVCL_0168), STE-1 — Homo sapiens (Human), Infectious mononucleosis, Transformed cell line (CVCL_W751)

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12603049/full.md

## References

2 references — full list in the complete paper: https://tomesphere.com/paper/PMC12603049/full.md

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Source: https://tomesphere.com/paper/PMC12603049