# Comparative Analysis of Microbial Communities and Biopolymer Production in Kombucha

**Authors:** Younhee Nam, Gayeon Seo, Younghoon Kim, Soo Rin Kim, Jong Nam Kim

PMC · DOI: 10.4014/jmb.2508.08004 · Journal of Microbiology and Biotechnology · 2025-10-28

## TL;DR

This study explores the microbial communities in kombucha and their role in producing bacterial cellulose, identifying key species and their industrial potential.

## Contribution

The study distinguishes SCOBY and broth microbial communities and links them to cellulose production, identifying efficient cellulose-producing strains.

## Key findings

- Komagataeibacter and Novacetimonas hansenii are key cellulose-producing strains in kombucha.
- Kombucha sample K2 showed the highest cellulose yield at 4.50 ± 2.28 g.
- Zygosaccharomyces species dominate the yeast community in kombucha.

## Abstract

While the microbial diversity of kombucha has been previously investigated, only a limited number of studies have explicitly distinguished between the symbiotic culture of bacteria and yeast (SCOBY) and the liquid broth, and even fewer have directly associated microbial diversity with bacterial cellulose production. This study investigated the microbial communities present in commercially available kombucha products by using both culture based and molecular analysis methods, along with metabolite profiling by chemical analyses. Culture based methods identified key cellulose-producing strains, including Komagataeibacter intermedius, K. rhaeticus, and Novacetimonas hansenii, while next-generation sequencing revealed Komagataeibacter as the dominant bacterial genus in kombucha. Yeast communities in kombucha were predominated by Zygosaccharomyces bisporus and Z. parabailii. As fermentation progressed, all kombucha samples exhibited typical fermentation dynamics, characterized by progressive sucrose depletion and an increase in ethanol and acetate production. Given the promising industrial applications of bacterial cellulose, the biopolymer content of kombucha was evaluated. Among the kombucha samples, K2 showed the highest cellulose yield (4.50 ± 2.28 g), and N. hansenii was identified as the most efficient cellulose producer among the isolates. This integrative approach provides critical insights into the role of microbial communities in regulating kombucha fermentation. Specifically, this study delineated the core microbiota required for stable fermentation and identified strains with enhanced cellulose producing capacity. Beyond defining the key microbial taxa associated with kombucha production, these findings underscore the industrial potential of kombucha derived cellulose producers and present a strategy for optimizing bacterial cellulose yield in large scale applications.

## Linked entities

- **Species:** Komagataeibacter intermedius (taxon 66229), Komagataeibacter rhaeticus (taxon 215221), Novacetimonas hansenii (taxon 436), Zygosaccharomyces bisporus (taxon 4957), Zygosaccharomyces parabailii (taxon 1365886)

## Full-text entities

- **Chemicals:** cellulose (MESH:D002482), sucrose (MESH:D013395), ethanol (MESH:D000431), acetate (MESH:D000085)
- **Species:** Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Zygosaccharomyces parabailii (species) [taxon 1365886], Zygosaccharomyces bisporus (species) [taxon 4957], Komagataeibacter intermedius (species) [taxon 66229], Komagataeibacter rhaeticus (species) [taxon 215221]

## Full text

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## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12602875/full.md

## References

49 references — full list in the complete paper: https://tomesphere.com/paper/PMC12602875/full.md

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Source: https://tomesphere.com/paper/PMC12602875