# Crystal Structure–Activity Relationship of Some MeO Phenylacrylonitriles: Dual Antimicrobial–Cytotoxic Effects and in Silico Perspectives

**Authors:** Leyla Babali Özen, Öner Ekici, Furkan Özen, Süleyman Berberler, Gül Özkan, Betül Yılmaz Öztürk, Pınar Oztopcu‐Vatan, Cansu Filik İşçen, Günseli Turgut Cin

PMC · DOI: 10.1002/open.202500280 · ChemistryOpen · 2025-06-12

## TL;DR

This study explores the antimicrobial and anticancer properties of methoxy-phenylacrylonitrile compounds, revealing their potential as dual-action therapeutic agents.

## Contribution

The paper introduces the first investigation of the dual antimicrobial and anticancer activities of these compounds, along with their crystallographic structure–activity relationships.

## Key findings

- Compound 2b shows selective cytotoxicity against MCF-7 breast cancer cells with an IC50 of 34 μM.
- Molecular docking shows strong binding to CDK1/Cks2 (−9.5 kcal mol−1) and PBP2 (−8.4 kcal mol−1), indicating dual therapeutic potential.
- Minimum inhibitory concentration values for antimicrobial activity range from 2.5 to 25 mg mL−1, with notable activity against Gram-positive bacteria.

## Abstract

Herein, methoxy‐substituted phenylacrylonitrile derivatives 2(a–c) are synthesized via Knoevenagel condensation and characterized using fourier‐transform infrared spectroscopy, nuclear magnetic resonance spectroscopy, and X‐ray crystallography (for 2a and 2b). Although compounds 2a and 2b have previously been reported in terms of their structural features, their dual antimicrobial and anticancer activities, as well as crystallographic structure–activity relationships, have not yet been investigated. Notably, no earlier studies assessed their selective cytotoxicity using both cancerous (MCF‐7) and healthy (L929) cell lines—a gap addressed in this work. Molecular docking analyzes reveal strong binding affinities to biological targets, including penicillin binding protein 2 (PBP2) (−8.4 kcal mol−1 for 2c) and CDK1/Cks2 (−9.5 kcal mol−1 for 2c), highlighting their dual‐action potential. Antimicrobial assays against nine bacterial strains show minimum inhibitory concentration values ranging from 2.5 to 25 mg mL−1, with 2c exhibiting notable activity against gram‐positive bacteria. Cytotoxicity assays demonstrate potent effects against MCF‐7 cells (IC50: 34 μM for 2b, 44 μM for 2a), while 2c shows broader but moderate activity. The integration of crystallographic, docking, and biological assays underscores the therapeutic potential of these derivatives, with 2(a,b) emerging as selective candidates for breast cancer treatment.

Methoxy‐phenylacrylonitriles (2a–c) are synthesized and characterized by fourier‐transform infrared spectroscopy, nuclear magnetic resonance spectroscopy, and X‐ray crystallography (for 2a,b). Compound 2b shows selective cytotoxicity against MCF‐7 cells (IC50: 34 μM) and enhances activity against Gram‐positive bacteria. Molecular docking reveals strong binding to CDK1/Cks2 (−9.5 kcal mol−
1), supporting dual therapeutic potential.© 2025 WILEY‐VCH GmbH

## Linked entities

- **Proteins:** Pbp2 (phosphatidylethanolamine binding protein 2)
- **Chemicals:** 2a (PubChem CID 101909865), 2b (PubChem CID 31204)
- **Diseases:** breast cancer (MONDO:0004989)

## Full-text entities

- **Genes:** CDK1 (cyclin dependent kinase 1) [NCBI Gene 983] {aka CDC2, CDC28A, P34CDC2}, CKS2 (CDC28 protein kinase regulatory subunit 2) [NCBI Gene 1164] {aka CKSHS2}
- **Diseases:** breast cancer (MESH:D001943), Cytotoxicity (MESH:D064420)
- **Chemicals:** MeO Phenylacrylonitriles (-)
- **Species:** Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395]
- **Cell lines:** MCF-7 — Homo sapiens (Human), Invasive breast carcinoma of no special type, Cancer cell line (CVCL_0031), L929 — Mus musculus (Mouse), Spontaneously immortalized cell line (CVCL_AR58)

## Full text

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## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12598805/full.md

## References

37 references — full list in the complete paper: https://tomesphere.com/paper/PMC12598805/full.md

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Source: https://tomesphere.com/paper/PMC12598805