# AI-assisted peripheral immune profiling reveals unconventional lymphocyte signatures associated with prognosis in soft tissue sarcoma patients

**Authors:** Jani Sofia Almeida, Luana Madalena Sousa, Patrícia Couceiro, Vera Alves, Joana Rodrigues, Ruben Fonseca, Paulo Freitas-Tavares, Manuel Santos-Rosa, José Manuel Casanova, Paulo Rodrigues-Santos

PMC · DOI: 10.3389/fimmu.2025.1677408 · Frontiers in Immunology · 2025-10-27

## TL;DR

This study uses AI to analyze immune cells in soft tissue sarcoma patients, finding specific lymphocyte patterns linked to survival and immune response.

## Contribution

AI-assisted immune profiling identifies unconventional lymphocyte signatures with prognostic value in soft tissue sarcoma.

## Key findings

- STS patients show systemic immune imbalance with increased CD8+ T cells and reduced NK cells.
- Unconventional lymphocyte populations like CD8+ γδ T cells correlate with poorer survival.
- γδ NKT-like cells are enriched in tumors, suggesting a role in immune surveillance.

## Abstract

Immunotherapy has reshaped the treatment of several cancers, yet patient responses remain highly variable, partly due to differences in immune competence. In soft tissue sarcomas (STS), the immune landscape is poorly characterized, limiting the development of prognostic markers and immune-based therapeutic strategies. This study aimed to comprehensively profile circulating and tumor-infiltrating cytotoxic lymphocyte populations in STS. Peripheral blood from patients and healthy donors was analyzed by multiparametric flow cytometry combined with AI-assisted unsupervised clustering, enabling the identification of both conventional and unconventional subsets. In a pilot cohort, tumor-infiltrating lymphocytes were evaluated using the same approach to explore systemic–local immune compartmentalization. STS patients displayed systemic immune imbalance with increased CD8+ T cells and reduced NK cells and CD161+ CD8+ T cells, consistent with overall immunosuppression. Several unconventional populations showed prognostic associations: elevated CD8+ γδ T cells and CD4+ NKT-like cells correlated with poorer survival, whereas CD8+ NKT-like cells were enriched in immune-competent patients and linked to better outcomes, suggesting potential protective functions. Pilot tumor analyses identified γδ NKT-like cells that were nearly absent from circulation, suggesting their selective enrichment within the tumor microenvironment. Together, these findings highlight the contribution of rarely profiled cytotoxic lymphocytes to systemic immune fitness and disease outcome in STS. Importantly, despite clinical and histological heterogeneity, patients showed consistent immune alterations, suggesting shared immunological features across STS subtypes. While limited by small tumor sample size and lack of functional assays, this study provides proof-of-concept that immune-based profiling can uncover novel prognostic markers and candidate populations of therapeutic relevance. Future work in larger, longitudinal cohorts, coupled with functional characterization, will be essential to validate these subsets and to define their role in STS immune surveillance and responsiveness to immunotherapy.

## Linked entities

- **Proteins:** CD8A (CD8 subunit alpha), Gpi1 (glucose-6-phosphate isomerase 1), KLRB1 (killer cell lectin like receptor B1)
- **Diseases:** soft tissue sarcoma (MONDO:0018078), STS (MONDO:0100137)

## Full-text entities

- **Genes:** CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, KLRB1 (killer cell lectin like receptor B1) [NCBI Gene 3820] {aka CD161, CLEC5B, NKR, NKR-P1, NKR-P1A, NKRP1A}
- **Diseases:** cancers (MESH:D009369), STS (MESH:D012509)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12597948/full.md

## References

61 references — full list in the complete paper: https://tomesphere.com/paper/PMC12597948/full.md

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Source: https://tomesphere.com/paper/PMC12597948