# Genetically instrumented circulating metabolites and hepatobiliary cancer risk: A multi-tiered Mendelian randomization and functional interrogation

**Authors:** Lin Tuo, Li Ting Yan, Ying Liu, Shu Qiang Wang, Xing Xiang Yang, Xiang An

PMC · DOI: 10.3389/fonc.2025.1680865 · Frontiers in Oncology · 2025-10-27

## TL;DR

This study identifies specific blood metabolites that may increase or decrease the risk of liver and bile duct cancers, offering potential new diagnostic and treatment targets.

## Contribution

The study uses genetic data to identify causal metabolites linked to hepatobiliary cancer risk and validates their effects in lab experiments.

## Key findings

- Dimethylarginine and 4-hydroxyhippurate increase hepatobiliary cancer risk.
- 3-hydroxyisobutyrate has a protective effect against hepatocellular carcinoma.
- Functional experiments confirm the pro- and anti-cancer roles of these metabolites.

## Abstract

Hepatobiliary malignancies—including hepatocellular carcinoma and cholangiocarcinoma—are major causes of cancer-related mortality worldwide, yet their regulatory pathways remain incompletely defined.

We employed a two-sample Mendelian randomization (MR) approach to systematically investigate causal relationships between 1,400 serum metabolites and hepatobiliary cancer risk. Through stringent quality control (all SNPs with F-statistics > 10) and sensitivity analyses (MR-Egger regression, weighted median method, and MR-PRESSO), we identified 10 candidate metabolites.

Meta-analysis confirmed three metabolites with robust associations: risk-increasing dimethylarginine (SDMA+ADMA) and 4-hydroxyhippurate, and protective 3-hydroxyisobutyrate. Multivariable MR validated the independent effects of 4-hydroxyhippurate and 3-hydroxyisobutyrate. In vitro functional experiments demonstrated that 4-hydroxyhippurate promoted, whereas 3-hydroxyisobutyrate inhibited, hepatocellular carcinoma cell proliferation.

These findings advance understanding of metabolic dysregulation in hepatobiliary malignancies and nominate candidate diagnostic biomarkers and therapeutic targets, providing translationally relevant hypotheses for precision medicine.

## Linked entities

- **Chemicals:** dimethylarginine (PubChem CID 10176589), 4-hydroxyhippurate (PubChem CID 151012), 3-hydroxyisobutyrate (PubChem CID 440873)
- **Diseases:** hepatocellular carcinoma (MONDO:0007256), cholangiocarcinoma (MONDO:0019087)

## Full-text entities

- **Diseases:** cholangiocarcinoma (MESH:D018281), cancer (MESH:D009369), hepatocellular carcinoma (MESH:D006528), Hepatobiliary malignancies (MESH:D004066)
- **Chemicals:** 3-hydroxyisobutyrate (-), SDMA (MESH:C024917), dimethylarginine (MESH:C487735)

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12597744/full.md

## References

53 references — full list in the complete paper: https://tomesphere.com/paper/PMC12597744/full.md

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Source: https://tomesphere.com/paper/PMC12597744