# SETD7-mediated H3K4me1 activates ALDH1A3 to drive ferroptosis resistance in esophageal squamous cell carcinoma

**Authors:** Yang Feng, Xingyue Liu, Yangxia Wang, Mingyuan Zhang, Yangyang Ji, Longfeng Zhang, Yilu Tong, Fuyou Zhou, Hongyang Liu, Liang Ming, Junhu Wan

PMC · DOI: 10.1038/s41419-025-08133-7 · 2025-11-07

## TL;DR

SETD7 boosts ESCC tumor growth and resistance to cell death by activating ALDH1A3 through epigenetic changes.

## Contribution

Discovers a new epigenetic-metabolic pathway involving SETD7, H3K4me1, and ALDH1A3 in ESCC progression and ferroptosis resistance.

## Key findings

- SETD7 is upregulated in ESCC and correlates with advanced clinical stages.
- SETD7 promotes ESCC cell proliferation and migration while enhancing ferroptosis resistance.
- SETD7 activates ALDH1A3 via H3K4me1 modification, increasing CoQ10H₂ and inhibiting lipid peroxidation.

## Abstract

SET domain-containing 7 (SETD7, also known as KMT7 or SET7/9), a histone lysine methyltransferase (HKMT) responsible for catalyzing histone H3 lysine 4 monomethylation (H3K4me1), has emerged as a key regulator in multiple cancers. However, the biological functions and epigenetic regulatory mechanisms of SETD7 in esophageal squamous cell carcinoma (ESCC) remain unclear. Our study found that SETD7 expression is significantly upregulated in ESCC tissues and positively correlates with clinical staging. Functional analyses revealed that SETD7 promotes ESCC cell proliferation and migration in vitro, while accelerating tumor growth in vivo. Additionally, SETD7 knockdown increased ESCC cell sensitivity to ferroptosis induction, indicating its dual functionality in tumorigenesis and ferroptosis resistance. Cleavage Under Targets and Tagmentation (CUT&Tag) sequencing analysis systematically mapped H3K4me1 modifications in ESCC cells, identifying ALDH1A3 (aldehyde dehydrogenase 1 family member A3) as a key downstream target. Mechanistically, SETD7-mediated H3K4me1 deposition at the ALDH1A3 promoter drives transcriptional activation, increasing the level of reduced coenzyme Q10 (CoQ10H₂) and inhibiting lipid peroxidation. This study reveals a novel epigenetic-metabolic axis (SETD7-H3K4me1-ALDH1A3/NADH/CoQ10H₂) that regulates ESCC progression and ferroptosis sensitivity, which highlights the clinical translational value of SETD7 in ESCC prognosis assessment and therapeutic development.

Schematic diagram illustrating the mechanism by which SETD7 accelerates ESCC progression through enhancing ferroptosis resistance. Created with BioRender.

Schematic diagram illustrating the mechanism by which SETD7 accelerates ESCC progression through enhancing ferroptosis resistance. Created with BioRender.

## Linked entities

- **Genes:** SETD7 (SET domain containing 7, histone lysine methyltransferase) [NCBI Gene 80854], ALDH1A3 (aldehyde dehydrogenase 1 family member A3) [NCBI Gene 220]
- **Diseases:** esophageal squamous cell carcinoma (MONDO:0005580)

## Full-text entities

- **Genes:** ALDH1A3 (aldehyde dehydrogenase 1 family member A3) [NCBI Gene 220] {aka ALDH1A6, ALDH6, MCOP8, RALDH3}, SETD7 (SET domain containing 7, histone lysine methyltransferase) [NCBI Gene 80854] {aka KMT7, SET7, SET7/9, SET9}
- **Diseases:** cancers (MESH:D009369), ESCC (MESH:D000077277), tumorigenesis (MESH:D063646)
- **Chemicals:** lipid (MESH:D008055), NADH (MESH:D009243), coenzyme Q10 (MESH:C024989), BioRender (-)

## Figures

10 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12595051/full.md

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Source: https://tomesphere.com/paper/PMC12595051