# Sphingomyelin synthase-related protein is a regulator of serine palmitoyltransferase

**Authors:** Xiang Li, Zhiqiang Li, Yeun-po Chiang, Tilla Worgall, Tade Souaiaia, Xian-Cheng Jiang

PMC · DOI: 10.1016/j.jlr.2025.100908 · 2025-09-23

## TL;DR

This paper shows that SMSr, a protein related to sphingolipid metabolism, regulates SPT activity and could be a new target for treating fatty liver disease.

## Contribution

The study reveals SMSr as a novel regulator of serine palmitoyltransferase (SPT) in sphingolipid biosynthesis.

## Key findings

- SMSr and SPT-related genes are co-expressed in liver and adipose tissues.
- SMSr overexpression increases SPTLC2 levels, while SMSr knockout reduces SPT activity.
- Phosphatidylethanolamine (PE) reverses SMSr-mediated SPTLC2 upregulation and reduces SPT activity.

## Abstract

Sphingomyelin synthase-related protein (SMSr) belongs to the SMS family; however, it cannot synthesize SM. We reported that SMSr is a phosphatidylethanolamine-specific phospholipase C, which is associated with metabolic dysfunction-associated fatty liver disease (MAFLD). However, the mechanism is unknown. Based on hierarchical clustering of the samples from the human Genotype-Tissue Expression project, we found that SMSr and serine palmitoyltransferase (SPT), the key enzyme for sphingolipid biosynthesis, as well as certain sphingolipid metabolism-related genes, belong to the same co-expression cluster in the liver and adipose tissues. We also found that Smsr expression is positively associated with Sptlc1 and Sptlc2 expression in both tissues of both genders. In a mouse study, we found that Smsr overexpression induced while Smsr knockout (KO) (under a high-fat diet) reduced SPT activity, thus, influencing most of the tested sphingolipids. Further, we found that PE treatment reversed Smsr overexpression-mediated SPTLC2 upregulation. PE supplement also reduced liver microsome SPT activity in a dose-dependent manner. Furthermore, we demonstrated that SMSr interacts with SPTLC2 in vivo. Thus, SMSr, as a member in the sphingolipid biosynthesis pathway, regulates SPT. Perturbation of SPT activity has been linked to the prevention of MAFLD and cardiovascular diseases. However, the approach to finding an SPT-specific inhibitor, as a drug, has not been successful so far. Importantly, global Smsr KO mice are viable and healthy; therefore, inhibiting SPT activity by reducing PE, mediated by SMSr/PE-PLC activity, could provide a novel approach for preventing and treating MAFLD.

## Linked entities

- **Genes:** SAMD8 (sterile alpha motif domain containing 8) [NCBI Gene 142891], AGXT (alanine--glyoxylate aminotransferase) [NCBI Gene 189], SPTLC1 (serine palmitoyltransferase long chain base subunit 1) [NCBI Gene 10558], SPTLC2 (serine palmitoyltransferase long chain base subunit 2) [NCBI Gene 9517]
- **Proteins:** LCB2 (long chain base2), SPTLC2 (serine palmitoyltransferase long chain base subunit 2)
- **Chemicals:** phosphatidylethanolamine (PubChem CID 5327011), PE (PubChem CID 5460654)
- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** Samd8 (sterile alpha motif domain containing 8) [NCBI Gene 67630] {aka 1110053F04Rik, 1700010P07Rik, PE-PLC, SMSr}, Hspg2 (perlecan (heparan sulfate proteoglycan 2)) [NCBI Gene 15530] {aka HSPG, Pcn, Plc, per}, Sptlc1 (serine palmitoyltransferase, long chain base subunit 1) [NCBI Gene 268656] {aka E030036H05, Lcb1, SPT1}, Sptlc2 (serine palmitoyltransferase, long chain base subunit 2) [NCBI Gene 20773] {aka LCB2, LCB2a, Spt2}, Sms (spermine synthase) [NCBI Gene 20603] {aka Gy, SPMSY, SpmST, gyro}
- **Diseases:** MAFLD (MESH:D005234), cardiovascular diseases (MESH:D002318)
- **Chemicals:** sphingolipid (MESH:D013107), SM (MESH:D012493), PE (-)
- **Species:** Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090]

## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12594915/full.md

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Source: https://tomesphere.com/paper/PMC12594915