# Streptomyces rimosus-inoculated soil exposure modulates metabolomic profiles under chronic stress

**Authors:** Sowon Yang, Jin Hee Kim, Sin-Ae Park, Myung Sook Oh, Choong Hwan Lee

PMC · DOI: 10.1016/j.csbj.2025.10.030 · Computational and Structural Biotechnology Journal · 2025-10-17

## TL;DR

Exposure to soil containing Streptomyces rimosus reduces anxiety and stress-related changes in mice by altering amino acid metabolism.

## Contribution

This study shows that short-term exposure to S. rimosus-inoculated soil can alleviate anxiety and stress in mice through metabolic modulation.

## Key findings

- Exposure to S. rimosus-inoculated soil reduced anxiety-like behaviors and improved neuroinflammation and HPA axis regulation in mice.
- Metabolomic analysis identified glutamate and sphingosine in the hippocampus and 5-hydroxytryptophan, valine, and methionine in plasma as potential biomarkers.
- Amino acid metabolism in the hippocampus and plasma was modulated following exposure to S. rimosus-inoculated soil.

## Abstract

Exposure to natural environments, including soil and microorganisms, is known to enhance emotional well-being and mitigate psychiatric disorders such as anxiety and depression. This study investigated the effects of short-term exposure to Streptomyces rimosus-inoculated soil, on mice with chronic restraint stress (CRS)-induced anxiety and the associated metabolic changes. Behavioral tests, including the light/dark box, open field, and novelty-suppressed feeding tests, revealed that exposure significantly alleviated anxiety-like behaviors, stress-induced neuroinflammation and hypothalamic-pituitary-adrenal (HPA) axis dysregulation of CRS mice. Untargeted metabolomics revealed alterations in amino acid metabolic pathways in the hippocampus and plasma. Potential biomarkers were highlighted, including glutamate and sphingosine in the hippocampus, and 5-hydroxytryptophan, valine, and methionine in the plasma, which showed improved metabolite levels and significant correlations with behavioral improvements, neuroinflammation, and HPA axis factors. This study provides evidence that short-term exposure to S. rimosus-inoculated soil may alleviate anxiety-like behaviors in a CRS mouse model by modulating amino acid metabolism and restoring potential anxiety-related biomarkers in hippocampus and plasma. These findings highlight a potential link between soil microbial exposure and stress-related physiological and metabolic responses.

•S. rimosus-inoculated soil exposure alleviated anxiety-like behaviors and improved neuroinflammation and HPA axis regulation.•Untargeted metabolomics revealed modulation of amino acid metabolic pathways in hippocampus and plasma.•Glutamate and sphingosine in the hippocampus were identified as potential biomarkers.•In plasma, 5-hydroxytryptophan, valine, and methionine were recognized as potential biomarkers.

S. rimosus-inoculated soil exposure alleviated anxiety-like behaviors and improved neuroinflammation and HPA axis regulation.

Untargeted metabolomics revealed modulation of amino acid metabolic pathways in hippocampus and plasma.

Glutamate and sphingosine in the hippocampus were identified as potential biomarkers.

In plasma, 5-hydroxytryptophan, valine, and methionine were recognized as potential biomarkers.

## Linked entities

- **Chemicals:** glutamate (PubChem CID 611), sphingosine (PubChem CID 5280335), 5-hydroxytryptophan (PubChem CID 144), valine (PubChem CID 1182), methionine (PubChem CID 876)
- **Diseases:** anxiety (MONDO:0005618), depression (MONDO:0002050)
- **Species:** Streptomyces rimosus (taxon 1927), Mus musculus (taxon 10090)

## Full-text entities

- **Diseases:** neuroinflammation (MESH:D000090862), anxiety (MESH:D001007), psychiatric disorders (MESH:D001523), depression (MESH:D003866)
- **Chemicals:** amino acid (MESH:D000596), glutamate (MESH:D018698), sphingosine (MESH:D013110), 5-hydroxytryptophan (MESH:D006916), valine (MESH:D014633), methionine (MESH:D008715)
- **Species:** Streptomyces rimosus (species) [taxon 1927], Mus musculus (house mouse, species) [taxon 10090]

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12589958/full.md

## References

52 references — full list in the complete paper: https://tomesphere.com/paper/PMC12589958/full.md

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Source: https://tomesphere.com/paper/PMC12589958