# A comprehensive reference catalog of human skin DNA virome reveals novel viral diversity and microenvironmental influences

**Authors:** Zhiming Li, Shenghui Li, Chongyin Han, Yuxiao Chen, Hefu Zhen, Yuzhe Sun, Xiaofeng Zhou, Yanmei Chen, Yan Zheng, Lianyi Han, Jean Krutmann, Chao Nie, Jiucun Wang, Jingjing Xia

PMC · DOI: 10.1128/spectrum.01178-25 · Microbiology Spectrum · 2025-09-30

## TL;DR

This study creates a detailed catalog of viruses on human skin, revealing new viral diversity and how viruses vary in different skin areas.

## Contribution

The study provides a comprehensive catalog of previously unknown skin viruses and their associations with skin microenvironments.

## Key findings

- 20,927 viral sequences were identified, with 90.85% being previously unknown.
- Distinct viral communities were found in oily, dry, and moist skin areas.
- Bacteriophages were linked to bacteria like Pseudomonas and Staphylococcus.

## Abstract

Human skin serves as a dynamic habitat for a diverse microbiome, including a complex array of viruses whose diversity and roles are not fully understood. A total of 2,760 skin metagenomes from 6 published skin studies were collected. A skin virome catalog was constructed using standard methods in the viromics field. Viral characteristics were identified through cross-cohort meta-analysis and used to characterize viral features across different skin environments. We identified 20,927 viral sequences, which clustered into 2,873 viral operational taxonomic units (vOTUs), uncovering a substantial breadth of viral diversity on human skin. The results also highlight significant differences in viral communities that are associated with varying skin microenvironments. The oily skin is enriched in Papillomaviridae, the dry skin area is enriched in Autographiviridae and Inoviridae, and the moist skin is enriched in Herelleviridae. We also investigated the relationship between bacteriophages and bacteria on the skin surface. We found that skin bacteria such as Pseudomonas, Klebsiella, and Staphylococcus are predicted to be infected by phages from the class Caudoviricetes. This comprehensive skin DNA viral catalog significantly advances our understanding of the virome’s role within the skin ecosystem.

This study presents a comprehensive reference catalog of the human skin DNA virome, constructed from 2,760 metagenomic datasets collected globally. It identified 20,927 viral sequences, with 90.85% representing previously unknown viruses, greatly expanding our understanding of skin viral diversity. The findings reveal significant differences in viral communities between distinct skin microenvironments (oily, dry, and moist) and highlight close interactions between bacteriophages and their bacterial hosts, suggesting a potential role for the virome in maintaining microbial balance and skin health. This extensive skin viral catalog constitutes a crucial resource for future epidemiological and therapeutic research, potentially facilitating the development of novel phage therapies and diagnostic markers for skin disorders.

## Linked entities

- **Species:** Pseudomonas (taxon 286), Klebsiella (taxon 570), Staphylococcus (taxon 1279)

## Full-text entities

- **Diseases:** skin disorders (MESH:D012871)
- **Species:** Homo sapiens (human, species) [taxon 9606], Staphylococcus (genus) [taxon 1279], Pseudomonas (RNA similarity group I, genus) [taxon 286], Klebsiella (genus) [taxon 570]

## Full text

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## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12584644/full.md

## References

62 references — full list in the complete paper: https://tomesphere.com/paper/PMC12584644/full.md

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Source: https://tomesphere.com/paper/PMC12584644