# Identifying prognostic targets in metastatic prostate cancer beyond AR

**Authors:** Emily Feng, Eric Feng, Tracy Berg, Isabella S. Nguyen, Lilac G. Nguyen, William Chen, Meng Zhang, David Quigley, Marina Sharifi, Haolong Li, Ilsa Coleman, Peter S. Nelson, Martin Sjöström, Shuang G. Zhao

PMC · DOI: 10.1002/2211-5463.70059 · FEBS Open Bio · 2025-05-22

## TL;DR

The study identifies eight genes that could serve as new therapeutic targets for metastatic prostate cancer based on their strong cell line dependency and poor clinical outcomes.

## Contribution

Combining functional screens with gene expression and clinical data to discover new prostate cancer drug targets beyond the androgen receptor.

## Key findings

- Eight genes (CYC, CYP51A1, DHFR, EBP, KIF15, PPM1D, SQLE, and UMPS) showed strong cell line dependency and worse clinical outcomes.
- Four of these genes (DHFR, EBP, KIF15, and PPM1D) are more highly expressed in neuroendocrine prostate cancer.
- Most of these genes remain targetable post-abiraterone therapy as they are not significantly decreased post-treatment.

## Abstract

Genome‐wide screens using CRISPR/RNAi can identify new therapeutic vulnerabilities in prostate cancer. In this study, we combine DepMap functional screen data with a large gene expression database (N = 1012) and clinical outcomes to identify potentially druggable targets. Eight genes (CYC, CYP51A1, DHFR, EBP, KIF15, PPM1D, SQLE, and UMPS) demonstrated strong dependency in cell lines and were also associated with worse prognosis clinically, representing potential therapeutic targets in metastatic prostate cancer. Four of these (DHFR, EBP, KIF15, and PPM1D) demonstrated higher expression in neuroendocrine prostate cancer. Furthermore, all but one (KIF15) were not significantly decreased from pretreatment to posttreatment, suggesting that they may remain targetable postabiraterone therapy. All eight genes showed evidence of protein expression in prostate cancers or cell lines. These potentially druggable targets associated with prostate cancer cell line dependency and worse clinical outcomes have also demonstrated literature support as potential targets, supporting further research into their potential clinical relevance as therapeutic targets in prostate cancer.

Genome‐wide functional screens combined with a large gene expression database and clinical outcomes can identify new therapeutic vulnerabilities in prostate cancer. Eight potentially druggable targets demonstrated strong dependency in cell lines, were associated with worse prognosis clinically, and showed evidence of protein expression in prostate cancers or cell lines, representing potential therapeutic targets.

## Linked entities

- **Genes:** CYCS (cytochrome c, somatic) [NCBI Gene 54205], CYP51A1 (cytochrome P450 family 51 subfamily A member 1) [NCBI Gene 1595], DHFR (dihydrofolate reductase) [NCBI Gene 1719], EBP (EBP cholestenol delta-isomerase) [NCBI Gene 10682], KIF15 (kinesin family member 15) [NCBI Gene 56992], PPM1D (protein phosphatase, Mg2+/Mn2+ dependent 1D) [NCBI Gene 8493], SQLE (squalene epoxidase) [NCBI Gene 6713], UMPS (uridine monophosphate synthetase) [NCBI Gene 7372]
- **Diseases:** prostate cancer (MONDO:0005159), metastatic prostate cancer (MONDO:0004956)

## Full-text entities

- **Genes:** KIF15 (kinesin family member 15) [NCBI Gene 56992] {aka BRDCS2, HKLP2, KLP2, KNSL7, NY-BR-62}, CYP51A1 (cytochrome P450 family 51 subfamily A member 1) [NCBI Gene 1595] {aka CP51, CYP51, CYPL1, LDM, P450-14DM, P450L1}, SQLE (squalene epoxidase) [NCBI Gene 6713], DHFR (dihydrofolate reductase) [NCBI Gene 1719] {aka DHFR1, DYR}, PPM1D (protein phosphatase, Mg2+/Mn2+ dependent 1D) [NCBI Gene 8493] {aka IDDGIP, JDVS, PP2C-DELTA, WIP1}, CYCS (cytochrome c, somatic) [NCBI Gene 54205] {aka CYC, HCS, THC4}, EBP (EBP cholestenol delta-isomerase) [NCBI Gene 10682] {aka CDPX2, CHO2, CPX, CPXD, D8D7I, MEND}, UMPS (uridine monophosphate synthetase) [NCBI Gene 7372] {aka ODC, OPRT}
- **Diseases:** neuroendocrine prostate cancer (MESH:D011471)

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC12582979/full.md

## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12582979/full.md

## References

73 references — full list in the complete paper: https://tomesphere.com/paper/PMC12582979/full.md

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Source: https://tomesphere.com/paper/PMC12582979