# A novel mechanism by which c-MYC is aberrantly activated by epigenetic silencing of its antisense lncRNA in colon cancer

**Authors:** Xuming Hu, Ye Wei, Meiying Zhang, Chunfeng Dou, Liping Wang, Gul Zaib, Huixian Wu, Wang Guo, Xiaoyuan Wang, Shihao Chen, Qi Xu, Mingzhou Guo, Hengmi Cui

PMC · DOI: 10.3389/fgene.2025.1552009 · 2025-10-21

## TL;DR

This study reveals that c-MYC, a cancer-related gene, is overactivated in colon cancer due to the silencing of a regulatory RNA called MYC-AS1.

## Contribution

The paper introduces a novel epigenetic mechanism where c-MYC is activated by DNA methylation silencing its antisense RNA MYC-AS1.

## Key findings

- MYC-AS1 is an antisense RNA that suppresses c-MYC expression and tumor growth.
- DNA hypermethylation silences MYC-AS1, leading to increased c-MYC activity in cancer cells.
- MYC-AS1 interacts with HuR protein and inhibits LDHA, a gene targeted by c-MYC.

## Abstract

Proto-oncogenes are abnormally activated in nearly all types of tumors. However, the epigenetic mechanism of proto-oncogene activation has not yet been well elucidated.

The present study involved the construction of a double-stranded cDNA library derived from gastrointestinal cancer cells, followed by high-throughput genome sequencing to select the c-MYC gene associated with colorectal cancer. Through RACE analysis, we identified the antisense RNA MYC-AS1 and its complete sequence. By investigating the cellular functions, expression of MYC-AS1, elucidating its interaction mechanism with the c-MYC gene, and exploring the impact of DNA methylation on MYC-AS1 expression, we uncover the fundamental principles and regulatory mechanisms underlying colorectal cancer development.

Here, we show that a subset of proto-oncogenes,including c-MYC, possess antisense RNAs. Upregulation of c-MYC in cancer tissues was attributed to the silencing of its antisense RNA MYC-AS1 via DNA hypermethylation. MYC-AS1 RNA markedly inhibited the proliferation of cancer cells in vitro and impeded tumor growth in nude mice in vivo by repressing the expression of c-MYC via an RNAi mechanism. MYC-AS1 RNA bound directly to the HuR protein in the cytoplasm, enhancing the RNA stability of MYC-AS1. Furthermore, MYC-AS1 inhibited c-MYC-targeted gene LDHA expression. Unlike the well-characterized oncogenic long noncoding RNA PVT1, which is coamplified with MYC and enhances its stability, MYC-AS1 is epigenetically silenced and functions as a tumor suppressor through an RNAi mechanism, revealing a distinct layer of MYC regulation.

Our work provides a novel mechanism by which c-MYC is activated in cancer cells by epigenetic silencing of its antisense RNA, which functions as a tumor suppressor.

## Linked entities

- **Genes:** MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 4609], LDHA (lactate dehydrogenase A) [NCBI Gene 3939], PVT1 (Pvt1 oncogene) [NCBI Gene 5820], ELAVL1 (ELAV like RNA binding protein 1) [NCBI Gene 1994]
- **Proteins:** ELAVL1 (ELAV like RNA binding protein 1)
- **Diseases:** colorectal cancer (MONDO:0005575)

## Full-text entities

- **Genes:** Pvt1 (Pvt1 oncogene) [NCBI Gene 19296] {aka Ayu21-84Imeg, Gt(pU21)84Imeg, Mis-1, Mlvi-1, Pvt-1}, Elavl1 (ELAV like RNA binding protein 1) [NCBI Gene 15568] {aka 2410055N02Rik, HUR, Hua}, Ldha (lactate dehydrogenase A) [NCBI Gene 16828] {aka Ldh1, Ldhm, l7R2}, Myc (Myc proto-oncogene, bHLH transcription factor) [NCBI Gene 17869] {aka Myc2, Niard, Nird, bHLHe39}
- **Diseases:** cancer (MESH:D009369), gastrointestinal cancer (MESH:D005770), colon cancer (MESH:D015179)
- **Species:** Mus musculus (house mouse, species) [taxon 10090]

## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12582551/full.md

---
Source: https://tomesphere.com/paper/PMC12582551