# Super enhancer lncRNA RP11-54O7.17 regulates the proliferation and metastasis of triple-negative breast cancer by targeting lysosomal degradation of S100A4

**Authors:** Hongtao Hu, Haoyang Bai, Chen Wang, Luyi Xi, Shasha Tian, Maowei Ni, Jiahui Lu, Hang Gao, Huajun Zhao

PMC · DOI: 10.1038/s41419-025-08072-3 · Cell Death & Disease · 2025-10-31

## TL;DR

This study shows how a specific long non-coding RNA helps control the spread of a type of aggressive breast cancer by targeting a key protein for degradation.

## Contribution

The novel contribution is identifying RP11-54O7.17 as a regulator of TNBC through lysosomal degradation of S100A4.

## Key findings

- RP11-54O7.17 overexpression suppresses TNBC proliferation and metastasis.
- RP11-54O7.17 promotes S100A4 degradation via the autophagy-lysosome pathway.
- Liposome-delivered RP11-54O7.17 shows anti-TNBC efficacy in vivo with no toxicity.

## Abstract

Triple-negative breast cancer (TNBC) is characterized by its high aggressiveness and treatment resistance, with limited therapeutic options and especially a lack of effective targeted therapeutic strategies. This study focuses on the role and regulatory mechanisms of super enhancer long non-coding RNA (SE-lncRNA) in TNBC. Through in-depth analysis of TCGA database, we revealed the specific expression pattern of SE-lncRNA in TNBC, and found that downregulation of RP11-54O7.17 was significantly correlated with poor prognosis of TNBC patients, which was experimentally verified. Both in vitro and in vivo results confirmed that RP11-54O7.17 overexpression effectively suppressed the proliferation and metastasis of TNBC. Further exploration showed that RP11-54O7.17 directly interacted with the S100A4 protein through its conserved L2b-type repeat structural fragment, promoted S100A4 binding to HSP70, targeting S100A4 degradation via the autophagy-lysosome pathway, which in turn blocked the activation of S100A4-STAT3 signaling axis. Moreover, RP11-54O7.17 delivered via liposome demonstrated significant anti-TNBC efficacy in an in vivo model without observing significant systemic toxicity. This study elucidates the regulatory role and molecular mechanism of RP11-54O7.17 in TNBC, which provides a strong scientific basis and potential therapeutic targets for the development of novel SE-lncRNA-based therapeutic strategies.

## Linked entities

- **Genes:** S100A4 (S100 calcium binding protein A4) [NCBI Gene 6275], STAT3 (signal transducer and activator of transcription 3) [NCBI Gene 6774]
- **Proteins:** S100A4 (S100 calcium binding protein A4), HSPA1A (heat shock protein family A (Hsp70) member 1A)
- **Diseases:** triple-negative breast cancer (MONDO:0005494)

## Full-text entities

- **Genes:** HSPA4 (heat shock protein family A (Hsp70) member 4) [NCBI Gene 3308] {aka APG-2, HEL-S-5a, HS24/P52, HSPH2, RY, hsp70}, S100A4 (S100 calcium binding protein A4) [NCBI Gene 6275] {aka 18A2, 42A, CAPL, FSP1, MTS1, P9KA}, SQLE (squalene epoxidase) [NCBI Gene 6713], STAT3 (signal transducer and activator of transcription 3) [NCBI Gene 6774] {aka ADMIO, ADMIO1, APRF, HIES}
- **Diseases:** TNBC (MESH:D064726), toxicity (MESH:D064420), metastasis (MESH:D009362)
- **Chemicals:** RP11-54O7.17 (-)
- **Species:** Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** RP11-54O7.17 — Homo sapiens (Human), Laryngeal squamous cell carcinoma, Cancer cell line (CVCL_5986)

## Full text

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## Figures

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Source: https://tomesphere.com/paper/PMC12578829