# Comprehensive analyses of single-cell and bulk RNA-seq reveal the biological and prognostic roles of BMP4 in pancreatic adenocarcinoma

**Authors:** Ao Wang, Xinglong Shen, Shan Lu, Chao Bi, Yang Cao, Yunfeng Liu, Meng Li, Yun Zhao, Huaizhang Jin, Xiaopeng Shen, Wei Dai, Yang Lei

PMC · DOI: 10.3389/fmolb.2025.1686938 · Frontiers in Molecular Biosciences · 2025-10-15

## TL;DR

BMP4 is highly active in pancreatic cancer and linked to worse survival, suggesting it could be a new target for treatment.

## Contribution

This study identifies BMP4 as a novel prognostic biomarker and metabolic regulator in pancreatic adenocarcinoma.

## Key findings

- BMP4 is upregulated in pancreatic cancer and correlates with poor patient survival.
- BMP4 primarily regulates metabolic pathways rather than canonical BMP signaling in cancer cells.
- BMP4 is an independent prognostic factor and improves outcome prediction when used in a nomogram.

## Abstract

Bone Morphogenetic Protein 4 (BMP4) plays a critical role in development, but its function in pancreatic adenocarcinoma (PAAD) is not well understood. We found that BMP4 is minimally expressed in the normal pancreas but markedly upregulated in PAAD, correlating with poor patient survival. Pan-cancer analysis revealed distinct expression and prognostic patterns of BMP4, while pathway analyses indicated that BMP4 predominantly regulates metabolic rather than canonical BMP signaling. Single-cell RNA-seq showed BMP4 enrichment in cancer cells and cancer stem cells, supporting its role in tumor metabolism. Importantly, BMP4 was identified as an independent prognostic factor for PAAD, and a nomogram incorporating BMP4 accurately predicted patient outcomes. Although BMP4 affected certain immune cell infiltrations, its prognostic impact was largely independent of immune modulation. Collectively, these findings highlight BMP4 as a potential biomarker and therapeutic target in PAAD.

## Linked entities

- **Genes:** BMP4 (bone morphogenetic protein 4) [NCBI Gene 652]
- **Diseases:** pancreatic adenocarcinoma (MONDO:0006047), PAAD (MONDO:0006047)

## Full-text entities

- **Genes:** BMP1 (bone morphogenetic protein 1) [NCBI Gene 649] {aka OI13, PCOLC, PCP, TLD}, BMP4 (bone morphogenetic protein 4) [NCBI Gene 652] {aka BMP2B, BMP2B1, MCOPS6, OFC11, ZYME}
- **Diseases:** Pan-cancer (MESH:D009369), PAAD (MESH:D010190)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC12568421/full.md

## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12568421/full.md

## References

41 references — full list in the complete paper: https://tomesphere.com/paper/PMC12568421/full.md

---
Source: https://tomesphere.com/paper/PMC12568421