# Building Sub-Saharan African PBPK Populations Reveals Critical Data Gaps: A Case Study on Aflatoxin B1

**Authors:** Orphélie Lootens, Marthe De Boevre, Sarah De Saeger, Jan Van Bocxlaer, An Vermeulen

PMC · DOI: 10.3390/toxins17100493 · Toxins · 2025-10-03

## TL;DR

This study explores how to model drug metabolism in Sub-Saharan African populations, highlighting significant data gaps and the need for region-specific models.

## Contribution

The study introduces a framework for building PBPK populations in Sub-Saharan Africa and identifies critical data gaps.

## Key findings

- Significant differences in CYP450 phenotype frequencies were found between African regions for CYP2B6, CYP2C19, and CYP2D6.
- Data coverage in literature is limited, with only 56.9% of East Africa and 62.9% of West Africa represented.
- Regional modeling is recommended over a single Sub-Saharan African population due to variability in enzyme phenotypes.

## Abstract

Physiologically based pharmacokinetic (PBPK) models allow to simulate the behaviour of compounds in diverse physiological populations. However, the categorization of individuals into distinct populations raises questions regarding the classification criteria. In previous research, simulations of the pharmacokinetics of the mycotoxin aflatoxin B1 (AFB1), were performed in the black South African population, using PBPK modeling. This study investigates the prevalence of clinical CYP450 phenotypes (CYP2B6, CYP2C9, CYP2C19, CYP2D6, CYP3A4/5) across Sub-Saharan Africa (SSA), to determine the feasibility of defining SSA as a single population. SSA was subdivided into Central, East, South and West Africa. The phenotype data were assigned to the different regions and a fifth SSA group was composed of all regions’ weighted means. Available data from literature only covered 7.30% of Central, 56.9% of East, 38.9% of South and 62.9% of West Africa, clearly indicating critical data gaps. A pairwise proportion test was performed between the regions on enzyme phenotype data. When achieving statistical significance (p < 0.05), a Cohen’s d-test was performed to determine the degree of the difference. Next, per region populations were built using SimCYP starting from the available SSA based SouthAfrican_Population FW_Custom population, supplemented with the phenotype data from literature. Simulations were performed using CYP probe substrates in all populations, and derived PK parameters (Cmax, Tmax, AUCss and CL) were plotted in bar charts. Significant differences between the African regions regarding CYP450 phenotype frequencies were shown for CYP2B6, CYP2C19 and CYP2D6. Limited regional data challenge the representation of SSA populations in these models. The scarce availability of in vivo data for SSA regions restricted the ability to fully validate the developed PBPK populations. However, observed literature data from specific SSA regions provided partial validation, indicating that SSA populations should ideally be modelled at a regional level rather than as a single entity. The findings, emerging from the initial AFB1-focused PBPK work, underscore the need for more extensive and region-specific data to enhance model accuracy and predictive value across SSA.

## Linked entities

- **Genes:** CYP2B6 (cytochrome P450 family 2 subfamily B member 6) [NCBI Gene 1555], CYP2C9 (cytochrome P450 family 2 subfamily C member 9) [NCBI Gene 1559], CYP2C19 (cytochrome P450 family 2 subfamily C member 19) [NCBI Gene 1557], CYP2D6 (cytochrome P450 family 2 subfamily D member 6 (gene/pseudogene)) [NCBI Gene 1565]
- **Chemicals:** aflatoxin B1 (PubChem CID 186907)

## Full-text entities

- **Genes:** CYP2B6 (cytochrome P450 family 2 subfamily B member 6) [NCBI Gene 1555] {aka CPB6, CYP2B, CYP2B7, CYPIIB6, EFVM, IIB1}, CYP2D6 (cytochrome P450 family 2 subfamily D member 6 (gene/pseudogene)) [NCBI Gene 1565] {aka CPD6, CYP2D, CYP2D7AP, CYP2D7BP, CYP2D7P2, CYP2D8P2}, CYP2C19 (cytochrome P450 family 2 subfamily C member 19) [NCBI Gene 1557] {aka CPCJ, CYP2C, CYPIIC17, CYPIIC19, P450C2C, P450IIC19}, CYP2C9 (cytochrome P450 family 2 subfamily C member 9) [NCBI Gene 1559] {aka CPC9, CYP2C, CYP2C10, CYPIIC9, P450-2C9, P450IIC9}
- **Chemicals:** AFB1 (MESH:D016604)

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC12567995/full.md

## Figures

3 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12567995/full.md

## References

61 references — full list in the complete paper: https://tomesphere.com/paper/PMC12567995/full.md

---
Source: https://tomesphere.com/paper/PMC12567995