# Development of a Fully Optimized Convolutional Neural Network for Astrocytoma Classification in MRI Using Explainable Artificial Intelligence

**Authors:** Christos Ch. Andrianos, Spiros A. Kostopoulos, Ioannis K. Kalatzis, Dimitris Th. Glotsos, Pantelis A. Asvestas, Dionisis A. Cavouras, Emmanouil I. Athanasiadis

PMC · DOI: 10.3390/jimaging11100343 · Journal of Imaging · 2025-10-02

## TL;DR

This paper presents an optimized CNN model for classifying astrocytoma grades in MRI scans with high accuracy and interpretability using XAI techniques.

## Contribution

A fully optimized CNN with hyperparameter tuning and XAI integration for astrocytoma classification in MRI is introduced.

## Key findings

- The model achieved 98.05% mean classification accuracy and 99.7% AUC on training data.
- The model demonstrated 93.34% accuracy on unmodified MRI slices, showing robustness.
- SHAP and LIME XAI techniques were used to highlight MRI regions influencing classification decisions.

## Abstract

Astrocytoma is the most common type of brain glioma and is classified by the World Health Organization into four grades, providing prognostic insights and guiding treatment decisions. The accurate determination of astrocytoma grade is critical for patient management, especially in high-malignancy-grade cases. This study proposes a fully optimized Convolutional Neural Network (CNN) for the classification of astrocytoma MRI slices across the three malignant grades (G2–4). The training dataset consisted of 1284 pre-operative axial 2D MRI slices from T1-weighted contrast-enhanced and FLAIR sequences derived from 69 patients. To provide the best possible model performance, an extensive hyperparameter tuning was carried out through the Hyperband method, a variant of Successive Halving. Training was conducted using Repeated Hold-Out Validation across four randomized data splits, achieving a mean classification accuracy of 98.05%, low loss values, and an AUC of 0.997. Comparative evaluation against state-of-the-art pre-trained models using transfer learning demonstrated superior performance. For validation purposes, the proposed CNN trained on an altered version of the training set yielded 93.34% accuracy on unmodified slices, which confirms the model’s robustness and potential use for clinical deployment. Model interpretability was ensured through the application of two Explainable AI (XAI) techniques, SHAP and LIME, which highlighted the regions of the slices contributing to the decision-making process.

## Linked entities

- **Diseases:** astrocytoma (MONDO:0019781), brain glioma (MONDO:0005499)

## Full-text entities

- **Diseases:** malignancy (MESH:D009369), brain glioma (MESH:C564230), Astrocytoma (MESH:D001254)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

16 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12565618/full.md

## References

43 references — full list in the complete paper: https://tomesphere.com/paper/PMC12565618/full.md

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Source: https://tomesphere.com/paper/PMC12565618