# Genetic Variability in NKG2 Receptors and Their Ligands: Associations with SARS-CoV-2 Infection and COVID-19 Severity

**Authors:** Jagoda Siemaszko, Katarzyna Grad, Jerzy Świerkot, Katarzyna Bogunia-Kubik

PMC · DOI: 10.3390/genes16101193 · Genes · 2025-10-13

## TL;DR

This study explores how genetic variations in NK cell receptors and their ligands are linked to SARS-CoV-2 infection and the severity of COVID-19.

## Contribution

The study identifies specific genetic variants and soluble molecule levels associated with increased risk and severity of COVID-19.

## Key findings

- NKG2A rs7301582 T and HLA-E rs1264457 A alleles are more common in infected individuals.
- MICA rs1051792 A allele is strongly associated with hospitalization due to severe symptoms.
- Higher serum-soluble MICB levels are found in infected individuals compared to controls.

## Abstract

Background: The emergence of the COVID-19 pandemic has accelerated research into diverse immune response mechanisms. One key area of interest is the regulation of cytotoxic activity by Natural Killer (NK) cells. These cells rely on a dynamic interplay between activating and inhibitory surface receptors that recognize specific ligands on target cells. Among these, receptors from the NKG2 family are particularly important, as maintaining their proper balance and function is essential for controlling NK cell cytotoxicity. Methods: In this study we employed qPCR to assess the genetic variability using single-nucleotide polymorphisms (SNPs) of NKG2A and NKG2D receptors and their ligands HLA-E and MICA/MICB. NKG2C deletion was determined by PCR-SSP, and serum-soluble levels of HLA-E and MICA/MICB molecules were measured by ELISA and Luminex methods. Results: Genotyping studies revealed that both NKG2A rs7301582 T and HLA-E rs1264457 A (HLA-E*01:01) alleles were predominant among infected individuals (OR = 2.21, p = 0.0258 and OR = 2.84, p = 0.0257, respectively). In contrast to MICB rs1065075 A, the MICA rs1051792 A (129Met) allele was most commonly found in hospitalized patients (OR = 14.95, p = 0.0114). The presence of the NKG2C del variant tended to be associated with an increased risk of SARS-CoV-2 infection (OR = 2.02, p = 0.0694). Moreover, higher concentrations of serum-soluble MICB was detected in infected individuals as compared to the control group (p = 0.008). Conclusions: Genetic variability of NK cell receptors and ligands as well as serum levels of their soluble forms showed associations with the risk of development of COVID-19 and the severity of its symptoms.

## Linked entities

- **Genes:** KLRC1 (killer cell lectin like receptor C1) [NCBI Gene 3821], KLRK1 (killer cell lectin like receptor K1) [NCBI Gene 22914], HLA-E (major histocompatibility complex, class I, E) [NCBI Gene 3133], MICA (MHC class I polypeptide-related sequence A) [NCBI Gene 100507436], MICB (MHC class I polypeptide-related sequence B) [NCBI Gene 4277], KLRC2 (killer cell lectin like receptor C2) [NCBI Gene 3822]
- **Diseases:** SARS-CoV-2 (MONDO:0100096), COVID-19 (MONDO:0100096)

## Full-text entities

- **Genes:** KLRK1 (killer cell lectin like receptor K1) [NCBI Gene 22914] {aka CD314, D12S2489E, KLR, NKG2-D, NKG2D}, KLRC1 (killer cell lectin like receptor C1) [NCBI Gene 3821] {aka CD159A, NKG2, NKG2A}, KLRC2 (killer cell lectin like receptor C2) [NCBI Gene 3822] {aka CD159c, NKG2-C, NKG2C}, MICB (MHC class I polypeptide-related sequence B) [NCBI Gene 4277] {aka PERB11.2}, MICA (MHC class I polypeptide-related sequence A) [NCBI Gene 100507436] {aka MIC-A, PERB11.1}, HLA-E (major histocompatibility complex, class I, E) [NCBI Gene 3133] {aka HLA-6.2, QA1}
- **Diseases:** infected (MESH:D007239), COVID-19 (MESH:D000086382)
- **Species:** Homo sapiens (human, species) [taxon 9606]
- **Mutations:** rs1051792, rs1065075, rs1264457, rs7301582

## Full text

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## Figures

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## References

43 references — full list in the complete paper: https://tomesphere.com/paper/PMC12564355/full.md

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Source: https://tomesphere.com/paper/PMC12564355