# Role of the Inflammasome Pathway According to the Expression of Proteins and Genetic Polymorphisms in COVID-19 Patients

**Authors:** Thiago Rodrigues dos Santos, Lucas Baena Carstens, Leonardo Vinícius Barbosa, Mariana Collete, Natan de Araujo, Caroline Busatta Vaz de Paula, Marina Luise Viola Azevedo, Ana Clara de Almeida, Seigo Nagashima, Lucia de Noronha, Cleber Machado-Souza

PMC · DOI: 10.3390/ijms26209993 · International Journal of Molecular Sciences · 2025-10-14

## TL;DR

This study explores how the inflammasome pathway contributes to severe COVID-19 by analyzing protein expression and genetic variations in patients who died during the second wave.

## Contribution

The study identifies specific proteins and genetic polymorphisms in the inflammasome pathway associated with severe COVID-19 outcomes.

## Key findings

- Lung tissue expressions of TLR-4, NLRP3, and IL-18 were significantly higher in second wave patients.
- Genetic variants in NFKB1 and NOX4 were linked to increased protein expression in severe cases.
- IL-18 showed strong immunological relevance tied to genetic variations in second wave cases.

## Abstract

COVID-19 severity is frequently linked to exacerbated inflammation, with the inflammasome pathway playing a key role in activating inflammatory interleukins. This observational post-mortem study evaluated the expression of inflammasome-associated molecules in patients who died from COVID-19 during the second wave. Minimally invasive autopsies were performed on patients from the first (n = 24) and second (n = 18) waves. Lung tissue samples underwent immunohistochemical staining for ACE-2, TLR-4, NF-κB, TNF-α, NOX4, NLRP3, ASC, CASPASE-1, IL-1β, IL-18, GSDMD, and CASPASE-9. Additionally, genetic polymorphisms within inflammasome-related genes were assessed via real-time polymerase chain reaction. Lung tissue expressions of TLR-4, NLRP3, and IL-18 were significantly higher in patients from the second wave compared to those from the first, with expression levels of 26.3 versus 12.1, 13.9 versus 6.4, and 25.6 versus 3.8, respectively. The A allele at rs4648090 of NFKB1 and the T allele at rs317155 of NOX4 were associated with increased corresponding protein expression by factors of 5.1 and 8.9, respectively. Notably, IL-18 demonstrated substantial immunological relevance, correlating strongly with elevated expression linked to these genetic variants in second wave cases. These findings suggest that the inflammasome pathway harbors biologically meaningful molecules implicated in severe COVID-19, meriting further investigation for their potential as diagnostic or therapeutic targets.

## Linked entities

- **Genes:** ACE2 (angiotensin converting enzyme 2) [NCBI Gene 59272], TLR4 (toll like receptor 4) [NCBI Gene 7099], NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790], NLRP3 (NLR family pyrin domain containing 3) [NCBI Gene 114548], STS (steroid sulfatase) [NCBI Gene 412], Caspase1 (caspase-1) [NCBI Gene 692604], IL1B (interleukin 1 beta) [NCBI Gene 3553], IL18 (interleukin 18) [NCBI Gene 3606], GSDMD (gasdermin D) [NCBI Gene 79792], Casp9 (caspase 9) [NCBI Gene 12371], NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790], NOX4 (NADPH oxidase 4) [NCBI Gene 50507]
- **Proteins:** ACE2 (angiotensin converting enzyme 2), TLR4 (toll like receptor 4), NFKB1 (nuclear factor kappa B subunit 1), TNF (tumor necrosis factor), NOX4 (NADPH oxidase 4), NLRP3 (NLR family pyrin domain containing 3), STS (steroid sulfatase), Caspase1 (caspase-1), IL1B (interleukin 1 beta), IL18 (interleukin 18), GSDMD (gasdermin D), Casp9 (caspase 9)
- **Diseases:** COVID-19 (MONDO:0100096)

## Full-text entities

- **Genes:** NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, NOX4 (NADPH oxidase 4) [NCBI Gene 50507] {aka KOX, KOX-1, RENOX}, IL18 (interleukin 18) [NCBI Gene 3606] {aka IGIF, IL-18, IL-1g, IL1F4}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, NLRP3 (NLR family pyrin domain containing 3) [NCBI Gene 114548] {aka AGTAVPRL, AII, AVP, C1orf7, CIAS1, CLR1.1}, CASP1 (caspase 1) [NCBI Gene 834] {aka ICE, IL1BC, P45}, ACE2 (angiotensin converting enzyme 2) [NCBI Gene 59272] {aka ACEH}, CASP9 (caspase 9) [NCBI Gene 842] {aka APAF-3, APAF3, ICE-LAP6, MCH6, PPP1R56}, PYCARD (PYD and CARD domain containing) [NCBI Gene 29108] {aka ASC, CARD5, TMS, TMS-1, TMS1}, GSDMD (gasdermin D) [NCBI Gene 79792] {aka DF5L, DFNA5L, FKSG10, GSDMDC1}, IL1B (interleukin 1 beta) [NCBI Gene 3553] {aka IL-1, IL1-BETA, IL1F2, IL1beta}, TLR4 (toll like receptor 4) [NCBI Gene 7099] {aka ARMD10, CD284, TLR-4, TOLL}
- **Diseases:** COVID-19 (MESH:D000086382), died (MESH:D003643), inflammation (MESH:D007249)
- **Species:** Homo sapiens (human, species) [taxon 9606]
- **Mutations:** rs317155, rs4648090

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC12564305/full.md

## Figures

1 figure with captions in the complete paper: https://tomesphere.com/paper/PMC12564305/full.md

## References

60 references — full list in the complete paper: https://tomesphere.com/paper/PMC12564305/full.md

---
Source: https://tomesphere.com/paper/PMC12564305