# Molecular Mechanisms and Therapeutic Perspectives of Gut Microbiota, Autophagy, and Apoptosis in Cholangiocarcinoma Pathophysiology

**Authors:** Viviana A. Ruiz-Pozo, Santiago Cadena-Ullauri, Patricia Guevara-Ramírez, Rafael Tamayo-Trujillo, Elius Paz-Cruz, Alejandro Cabrera-Andrade, Ana Karina Zambrano

PMC · DOI: 10.3390/ijms26209949 · International Journal of Molecular Sciences · 2025-10-13

## TL;DR

This paper explores how gut microbes, cell death processes, and immune responses interact in bile duct cancer, suggesting new treatment strategies.

## Contribution

The paper integrates molecular and microbiological evidence to propose gut microbiota as a biomarker and therapeutic target in cholangiocarcinoma.

## Key findings

- Gut microbiota dysbiosis disrupts apoptosis and autophagy, contributing to bile duct cancer progression.
- Specific bacteria like Escherichia coli and Bifidobacterium have strain-dependent tumor-promoting or suppressing effects.
- Modulating gut microbiota through diet and therapies may improve cancer treatment outcomes.

## Abstract

Cholangiocarcinoma (CCA) is an aggressive malignancy of the biliary tract with rising global incidence and limited treatment options. Its pathogenesis involves a complex interplay of genetic mutations, epigenetic dysregulation, inflammatory signaling, and environmental influences. Emerging evidence highlights the pivotal role of the gut–liver axis and microbiota dysbiosis in shaping biliary homeostasis and disease progression. Alterations in microbial composition disrupt apoptosis and autophagy, two key processes regulating cell survival and death, thereby contributing to tumorigenesis, metastasis, and therapy resistance. Specific taxa, including Enterococcus, Escherichia coli, Pseudomonas, Bifidobacterium, and Bacillus, demonstrate strain-dependent effects, acting either as tumor promoters through genotoxic metabolites and immune evasion or as potential tumor suppressors by inducing apoptosis and immune activation. These findings underscore the context-dependent roles of microbiota in CCA biology. Importantly, microbiota modulation offers novel therapeutic opportunities. Dietary interventions such as probiotics, prebiotics, and nutritional strategies, alongside innovative microbiome-targeted therapies, hold promise for restoring microbial balance, enhancing antitumor immunity, and improving patient outcomes. This review integrates current molecular and microbiological evidence to propose the gut microbiota as both a biomarker and a therapeutic target in CCA, opening avenues for precision medicine approaches in hepatobiliary oncology.

## Linked entities

- **Diseases:** Cholangiocarcinoma (MONDO:0019087), bile duct cancer (MONDO:0003059)
- **Species:** Enterococcus (taxon 1350), Escherichia coli (taxon 562), Pseudomonas (taxon 286), Bifidobacterium (taxon 1678), Bacillus (taxon 1386)

## Full-text entities

- **Diseases:** inflammatory (MESH:D007249), metastasis (MESH:D009362), malignancy (MESH:D009369), CCA (MESH:D018281), tumorigenesis (MESH:D063646)
- **Species:** Escherichia coli (E. coli, species) [taxon 562], Bifidobacterium (genus) [taxon 1678], Enterococcus (genus) [taxon 1350], Homo sapiens (human, species) [taxon 9606], Bacillus (genus) [taxon 55087], Pseudomonas (RNA similarity group I, genus) [taxon 286]

## Full text

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## Figures

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## References

145 references — full list in the complete paper: https://tomesphere.com/paper/PMC12564149/full.md

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Source: https://tomesphere.com/paper/PMC12564149