# Rhythmic Dynamics of Stress Granules in Wild-Type and Bmal1−/− Fibroblasts Lacking a Functional Canonical Circadian Clock

**Authors:** Melisa Malcolm, Julio M. Pusterla, Laura G. Penazzi, Alejandra Trenchi, Victoria A. Acosta-Rodríguez, Maximiliano N. Ríos, Marcos Villarreal, Mario E. Guido, Eduardo Garbarino-Pico

PMC · DOI: 10.3390/ijms26209943 · International Journal of Molecular Sciences · 2025-10-13

## TL;DR

Stress granules show daily rhythms in mouse cells, even without a key circadian clock gene, suggesting alternative timing mechanisms.

## Contribution

Demonstrates that stress granule rhythmicity persists in Bmal1−/− cells, indicating non-canonical circadian regulation.

## Key findings

- SG number, eIF3 signal intensity, and area oscillated with ~24 h rhythms in NIH/3T3 cells.
- SG rhythmicity persisted in Bmal1−/− MEFs but with altered amplitude and phase.
- Several SG-associated RNA-binding proteins showed time-dependent changes in mRNA or protein levels.

## Abstract

Circadian rhythms are endogenous ~24 h oscillations that regulate diverse biochemical processes. Although stress responses can exhibit circadian modulation, evidence for rhythmic regulation of stress granules (SGs)—cytoplasmic RNA–protein condensates formed under stress—remains limited. We investigated sodium arsenite-induced SG dynamics in NIH/3T3 cultures. SG number, eIF3 signal intensity—an established SG marker—and area oscillated with a period of ~24 h. These rhythms persisted in Bmal1−/− mouse embryonic fibroblasts (MEFs), despite lacking a transcription–translation feedback loop (TTFL) that constitutes the canonical circadian clock, but with altered amplitude and phase, indicating partial dependence on the molecular clock. Several SG-associated RNA-binding proteins (TIA-1, BRF1, hnRNP Q, and LARK) exhibited time-dependent changes at the mRNA and/or protein level, suggesting potential mechanisms for rhythmic SG modulation. Unlike previous in vivo reports linking SG variation to eIF2α phosphorylation, no temporal changes in phosphorylated eIF2α were observed, highlighting differences between isolated cells and tissues. Our results show that SG rhythmicity can persist without BMAL1, supporting alternative oscillatory mechanisms that contribute to the temporal organization of stress responses. Given their role in cell survival and the association of SG dysfunction with disease, these rhythms provide insight into how cellular stress responses are temporally regulated.

## Linked entities

- **Genes:** BMAL1 (basic helix-loop-helix ARNT like 1) [NCBI Gene 406]
- **Proteins:** EIF3A (eukaryotic translation initiation factor 3 subunit A), TIA1 (TIA1 cytotoxic granule associated RNA binding protein), BRF1 (BRF1 general transcription factor IIIB subunit), SYNCRIP (synaptotagmin binding cytoplasmic RNA interacting protein), RBM4 (RNA binding motif protein 4), EIF2A (eukaryotic translation initiation factor 2A)
- **Chemicals:** sodium arsenite (PubChem CID 443495)
- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** Syncrip (synaptotagmin binding, cytoplasmic RNA interacting protein) [NCBI Gene 56403] {aka 2610109K23Rik, 4632417O19Rik, GRY-RBP, Nsap1, Nsap1l, hnRNP Q}, Rbm4 (RNA binding motif protein 4) [NCBI Gene 19653] {aka 4921506I22Rik, Lark1, Mlark, Rbm4a, lark}, Brf1 (BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit) [NCBI Gene 72308] {aka 2510002F24Rik, GTF3B, TAF3C, TAFIII90, TFIIIB90, mTFIIIB90}, Eif2a (eukaryotic translation initiation factor 2A) [NCBI Gene 229317] {aka D030048D22, D3Ertd194e}, Tia1 (cytotoxic granule-associated RNA binding protein 1) [NCBI Gene 21841] {aka 2310050N03Rik, TIA-1, mTIA-1}, Eif3a (eukaryotic translation initiation factor 3, subunit A) [NCBI Gene 13669] {aka A830012B05Rik, Csma, Eif3, Eif3s10, mKIAA0139}, Bmal1 (basic helix-loop-helix ARNT like 1) [NCBI Gene 11865] {aka Arnt3, Arntl, BMAL1b, MOP3, bHLHe5, bmal1b'}
- **Chemicals:** sodium arsenite (MESH:C017947)
- **Species:** Mus musculus (house mouse, species) [taxon 10090]
- **Cell lines:** NIH/3T3 — Mus musculus (Mouse), Spontaneously immortalized cell line (CVCL_0594)

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12564134/full.md

## References

71 references — full list in the complete paper: https://tomesphere.com/paper/PMC12564134/full.md

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Source: https://tomesphere.com/paper/PMC12564134