# Regulation of PD-L1 Protein Expression by the E3 Ubiquitin Ligase GP78

**Authors:** Madhumita Chatterjee, Julio M. Pimentel, Jun-Ying Zhou, Thamarahansi Mugunamalwaththa, Zhe Yang, Avraham Raz, Gen Sheng Wu

PMC · DOI: 10.3390/cimb47100829 · Current Issues in Molecular Biology · 2025-10-09

## TL;DR

This study reveals that the E3 ubiquitin ligase GP78 regulates PD-L1 protein levels, offering a new strategy to improve cancer immunotherapies.

## Contribution

The study identifies GP78 as a novel E3 ligase that targets PD-L1 for ubiquitination and degradation.

## Key findings

- GP78 physically interacts with PD-L1, confirmed by IP, Western blotting, and AlphaFold2 modeling.
- GP78 mediates PD-L1 proteasomal degradation through K48-linked ubiquitination.
- GP78 expression is inversely correlated with PD-L1 levels in cancer, suggesting clinical implications.

## Abstract

Immune checkpoint inhibitors (ICIs), including PD-L1 inhibitors, have been approved by the FDA for the treatment of cancers; however, only a small number of cancer patients benefit from these ICIs. Furthermore, the development of drug resistance to this type of treatment is often inevitable. The mechanisms of resistance to PD-L1 inhibitors can be attributed, in part, to an incomplete understanding of the regulation of PD-L1 protein expression. In this study, we identified the role of the E3 ligase GP78, also known as the Autocrine Motility Factor Receptor (AMFR), in the regulation of PD-L1 protein levels. We show that GP78 physically interacts with PD-L1, which is confirmed by IP and Western blotting and is supported by molecular modelling using AlphaFold2. Our modeling studies predict that the interface amino acids of the Ig1 domain of PD-L1 interact with the RING domain and a β-hairpin preceding the CUE domain of GP78. The crystal structure of the PD-1/PD-L1 complex reveals that the interaction with PD-1 is mediated by the Ig1 domain of PD-L1. Furthermore, proteasomal degradation of PD-L1 has been observed via GP78-mediated K48-linked ubiquitination, indicating a key regulatory role for GP78 in the downregulation of PD-L1. Because GP78 expression is inversely correlated with PD-L1 levels in cancer, these findings may have clinical implications for predicting tumor immune evasion and patient response to PD-1/PD-L1 blockade therapies. Taken together, these findings identify a previously unknown mechanism by which GP78 targets PD-L1 for ubiquitination and subsequent degradation in cancer cells, and suggest that blocking the interaction between PD-L1 and PD-1 by an E3 ligase is a novel strategy to improve immunotherapies for cancer patients.

## Linked entities

- **Genes:** AMFR (autocrine motility factor receptor) [NCBI Gene 267], AMFR (autocrine motility factor receptor) [NCBI Gene 267], CD274 (CD274 molecule) [NCBI Gene 29126], PDCD1 (programmed cell death 1) [NCBI Gene 5133]
- **Proteins:** AMFR (autocrine motility factor receptor), CD274 (CD274 molecule), PDCD1 (programmed cell death 1)
- **Diseases:** cancer (MONDO:0004992)

## Full-text entities

- **Genes:** CD274 (CD274 molecule) [NCBI Gene 29126] {aka ADMIO5, B7-H, B7H1, PD-L1, PDCD1L1, PDCD1LG1}, MUL1 (mitochondrial E3 ubiquitin protein ligase 1) [NCBI Gene 79594] {aka C1orf166, GIDE, MAPL, MULAN, RNF218}, AMFR (autocrine motility factor receptor) [NCBI Gene 267] {aka GP78, RNF45, SPG89}, PDCD1 (programmed cell death 1) [NCBI Gene 5133] {aka ADMIO4, AIMTBS, CD279, PD-1, PD1, SLEB2}
- **Diseases:** cancer (MESH:D009369)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12563870/full.md

## References

32 references — full list in the complete paper: https://tomesphere.com/paper/PMC12563870/full.md

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Source: https://tomesphere.com/paper/PMC12563870