# Macrophage Zc3h12c Limits Tissue Inflammation and Injury via Alternative Splicing of Pre‐mRNA

**Authors:** Chenyu Li, Julian Aurelio Marschner, Yoshihiro Kusunoki, Ningxin Zhang, Xiaoxin Li, Hao Deng, Zhibo Zhao, Kanako Watanabe‐Kusunoki, Zhihui Zhu, Yan Xu, Stefanie Steiger, Maciej Lech, Katalin Susztak, Christian Schulz, Hans‐Joachim Anders

PMC · DOI: 10.1002/advs.202506707 · Advanced Science · 2025-08-20

## TL;DR

This study shows that the protein Zc3h12c in macrophages helps reduce kidney inflammation and injury by controlling RNA splicing and gene expression.

## Contribution

The study identifies Zc3h12c's dual role in macrophages, regulating RNA degradation and splicing, with STAT1 as a key target.

## Key findings

- Zc3h12c suppresses macrophage activation toward a pro-inflammatory phenotype.
- Zc3h12c modulates the alternative splicing of pre-mRNA STAT1.
- Loss of Zc3h12c in macrophages leads to increased kidney injury and inflammation.

## Abstract

RNA‐binding proteins regulate post‐transcriptional gene translation, but the macrophage‐specific role of Zc3h12c remains poorly characterized. Here, the role of Zc3h12c in macrophages is characterized using Tnfrsf11aCre‐Zc3h12cflox/flox mice. Both Tnfrsf11a and Zc3h12c are highly expressed in the kidney tissue from patients with chronic kidney disease and showed a positive association with an interstitial fibrosis score. Single cell RNA sequencing demonstrated abundant Tnfrsf11a expression in murine kidney macrophages and a correlation with the induction of chemokines, macrophage phagocytosis, and activation upon kidney injury. In various kidney injury models, Tnfrsf11aCre‐Zc3h12cflox/flox mice suffered from more injury and inflammation in the kidney, characterized by an increase in Ccr2 positive leukocyte infiltration. Mechanistic in vitro studies revealed that Zc3h12c suppresses macrophage activation toward a pro‐inflammatory phenotype, modulates macrophage survival, migration, and phagocytosis. Both in silico and in vitro analysis indicated that Zc3h12c regulates the pro‐inflammatory cytokines/chemokines and chemokine receptors expression and modulates the alternative splicing of pre‐mRNAs STAT1. Thus, macrophage‐derived Zc3h12c limits tissue inflammation and injury, potentially via alternate splicing of pre‐mRNAs.

This work defines the context‐dependent function of Zc3h12c in macrophages using the Tnfrsf11a‐Cre system. It reveals Zc3h12c's dual mechanism—regulating RNA degradation and alternative splicing—with STAT1 as a key target. The findings elucidate a novel post‐transcriptional pathway and identify STAT1 isoforms as potential therapeutic targets for kidney injury.

## Linked entities

- **Genes:** ZC3H12C (zinc finger CCCH-type containing 12C) [NCBI Gene 85463], TNFRSF11A (TNF receptor superfamily member 11a) [NCBI Gene 8792], STAT1 (signal transducer and activator of transcription 1) [NCBI Gene 6772], CCR2 (C-C motif chemokine receptor 2) [NCBI Gene 729230]
- **Diseases:** chronic kidney disease (MONDO:0005300)
- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** Tnfrsf11a (tumor necrosis factor receptor superfamily, member 11a, NFKB activator) [NCBI Gene 21934] {aka Ly109, ODFR, OFE, Rank, TRANCE-R, mRANK}, Ccr2 (C-C motif chemokine receptor 2) [NCBI Gene 12772] {aka Cc-ckr-2, Ccr2a, Ccr2b, Ckr2, Ckr2a, Ckr2b}, Stat1 (signal transducer and activator of transcription 1) [NCBI Gene 20846] {aka 2010005J02Rik}, Zc3h12c (zinc finger CCCH type containing 12C) [NCBI Gene 244871] {aka A230108E06, C230027N18Rik, mKIAA1726}
- **Diseases:** chronic kidney disease (MESH:D051436), interstitial fibrosis (MESH:D005355), Injury (MESH:D014947), kidney (MESH:D007674), Inflammation (MESH:D007249)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12561471/full.md

## References

95 references — full list in the complete paper: https://tomesphere.com/paper/PMC12561471/full.md

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Source: https://tomesphere.com/paper/PMC12561471