# Epigenetic modifications of the PHOX2A and CDH2 genes expression– new insights into the pathogenesis of multiple myeloma

**Authors:** Karolina Łuczkowska, Martyna Brzosko, Patrycja Stodolak, Piotr Kulig, Krzysztof Sommerfeld, Iga Stukan, Bartłomiej Baumert, Alina Jurewicz, Andrzej Bohatyrewicz, Edyta Paczkowska, Bogusław Machaliński

PMC · DOI: 10.1186/s12885-025-15030-x · BMC Cancer · 2025-10-27

## TL;DR

This study explores how changes in gene methylation and miRNA expression contribute to the progression of multiple myeloma, identifying PHOX2A and CDH2 as key genes linked to disease development.

## Contribution

The study provides new insights into the epigenetic regulation of PHOX2A and CDH2 genes in multiple myeloma progression.

## Key findings

- PHOX2A and CDH2 genes show decreased methylation and increased mRNA expression in multiple myeloma compared to MGUS.
- MGUS patients exhibit upregulation of miR-208b-3p and miR-320c, which inhibit PHOX2A and CDH2 expression.
- Circulating miRNA profiles may serve as biomarkers for disease progression in multiple myeloma.

## Abstract

Multiple myeloma (MM) is an incurable malignancy that arises from precursory conditions, specifically monoclonal gammopathy of unknown significance (MGUS) and smoldering multiple myeloma (SMM). The pathogenesis of MM remains largely elusive, particularly in the context of epigenetics.

The aim of this study was to uncover new bioinformatic insights related to the pathogenesis of MM in the context of epigenetic analysis using the NGS method.

A total of 60 patients with MM and MGUS were enrolled in the study. Myeloma CD138 + cells were isolated from the collected bone marrow using an immunomagnetic method and used to analyze the DNA methylation profile using the MethylationEPICv2.0 BeadChip Kit. Peripheral blood plasma was used to analyze the expression profile of circulating miRNAs using the miRNAseq method. Additionally, global epigenetic assessment allowed for the selection of several target genes and assessment of their expression using the qRT-PCR method.

Our in-depth analysis allowed us to focus on two genes, PHOX2A and CDH2, which play significant roles in carcinogenesis, and their increased expression is associated with poor prognosis in oncological patients. We observed a decrease in the methylation level associated with these genes in patients with MM compared with those with MGUS, whereas the mRNA expression level was increased. Moreover, among patients with MGUS compared with MM, patients with MGUS presented upregulation of specific miRNAs, namely, miR-208b-3p, and miR-320c, which act as inhibitors of the aforementioned genes.

Ultimately, identifying genes implicated in the progression of MM may pave the way for the refinement of current treatment protocols or the development of novel therapeutic strategies centred on epigenetic modifications or gene therapies. Additionally, the expression profile of circulating miRNAs may prove useful in selecting molecules that will constitute a good biomarker of disease progression from the preclinical to the fully symptomatic stage.

## Linked entities

- **Genes:** PHOX2A (paired like homeobox 2A) [NCBI Gene 401], CDH2 (cadherin 2) [NCBI Gene 1000]
- **Diseases:** multiple myeloma (MONDO:0009693), monoclonal gammopathy of unknown significance (MONDO:0004225), smoldering multiple myeloma (MONDO:0005235)

## Full-text entities

- **Genes:** PHOX2A (paired like homeobox 2A) [NCBI Gene 401] {aka ARIX, CFEOM2, FEOM2, PMX2A}, SDC1 (syndecan 1) [NCBI Gene 6382] {aka CD138, SDC, SYND1, syndecan}, CDH2 (cadherin 2) [NCBI Gene 1000] {aka ACOGS, ADHD8, ARVD14, CD325, CDHN, CDw325}
- **Diseases:** malignancy (MESH:D009369), MGUS (MESH:D008998), MM (MESH:D009101), SMM (MESH:D000075122), carcinogenesis (MESH:D063646)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12560563/full.md

## References

2 references — full list in the complete paper: https://tomesphere.com/paper/PMC12560563/full.md

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Source: https://tomesphere.com/paper/PMC12560563