# Integrated machine learning-based establishment of a prognostic model in multicenter cohorts for acute myeloid leukemia

**Authors:** Lin Yan, Huasong Yu, Xiaoyi Xu, Mingcheng Liu

PMC · DOI: 10.3389/fonc.2025.1649594 · Frontiers in Oncology · 2025-10-14

## TL;DR

Researchers developed a machine learning model to predict outcomes in acute myeloid leukemia patients and identified CD69 as a potential treatment target.

## Contribution

A novel machine learning-based prognostic model (MLAPS) and experimental validation of CD69's role in AML progression.

## Key findings

- MLAPS outperformed existing clinical features and signatures in predicting AML prognosis.
- CD69 was confirmed to promote malignant progression in AML through experimental validation.
- Malignant marker genes were found to correlate with prognosis and immune classification.

## Abstract

Acute myeloid leukemia (AML) is a highly heterogeneous malignancy, with leukemic cell diversity contributing to disease progression and treatment resistance. This study aimed to evaluate the functional and prognostic significance of leukemic cell-related genes.

We analyzed single-cell RNA sequencing data to identify malignant marker genes in AML. Consensus clustering was used to assess associations with prognosis and immune responses. A prognostic model, the malignant leukemia marker gene prognostic signature (MLAPS), was developed using 101 models across 10 machine learning algorithms and validated in five independent cohorts. Functional assays were conducted to explore the role of CD69.

We identified a set of malignant marker genes significantly correlated with prognosis and immune classification. The MLAPS showed strong predictive performance, surpassing most clinical features and previously published signatures. Experimental validation confirmed that CD69 promotes malignant progression in AML.

This study highlights the clinical value of leukemic cell-specific genes and presents MLAPS as a robust prognostic tool. CD69 may serve as a potential therapeutic target in AML.

## Linked entities

- **Genes:** CD69 (CD69 molecule) [NCBI Gene 969]
- **Diseases:** acute myeloid leukemia (MONDO:0015667)

## Full-text entities

- **Genes:** CD69 (CD69 molecule) [NCBI Gene 969] {aka AIM, BL-AC/P26, CLEC2C, EA1, GP32/28, MLR-3}
- **Diseases:** AML (MESH:D015470), malignancy (MESH:D009369), leukemic (MESH:D007938)

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12560054/full.md

## References

36 references — full list in the complete paper: https://tomesphere.com/paper/PMC12560054/full.md

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Source: https://tomesphere.com/paper/PMC12560054