# Whole genome sequence of Penicillium kloeckeri and insight into its growth-promoting, saline alkaline tolerance properties

**Authors:** Wenxiao Cui, Yafen Wu, Bin Ni, Jia Cao

PMC · DOI: 10.3389/fmicb.2025.1675497 · Frontiers in Microbiology · 2025-10-10

## TL;DR

A new fungus, Penicillium kloeckeri, was found to promote plant growth and tolerate salty soil, offering potential for agriculture.

## Contribution

The study presents the genome sequence and functional insights of a novel Penicillium kloeckeri strain with agricultural potential.

## Key findings

- P. kloeckeri genome sequencing revealed genes linked to plant growth promotion and soil improvement.
- Inoculation with P. kloeckeri significantly enhanced soybean root growth under salt stress.
- The fungus improved saline alkali soil by reducing pH and enhancing nutrient availability.

## Abstract

Microbial agents, mainly bacterial strains, are widely used in agriculture, their often limited efficacy underscores the critical need for resilient fungal alternatives. A novel strain of Penicillium kloeckeri with potential agricultural applications was isolated and purified.

Here, the genome of P. kloeckeri was sequenced and function predicted. The assembled P. kloeckeri genome had a 34.28 Mb genome size with 41.87% GC content, and revealed functional genes associated with Indole-3-Acetic Acid (IAA), daidzein, siderophore, and organic acid secretion, suggesting its role in plant growth promotion and soil improvement. Metabolite analysis further confirmed daidzein and amino acid production. Under salt stress conditions, P. kloeckeri inoculation (YJKS) significantly improved soybean growth compared to the salt-stressed control (YCK). Specifically, inoculation increased stem diameter by 17.79% and dramatically enhanced root length (99.95%), root area (111.96%), root volume (114.80%), and root biomass (14.97%). Furthermore, in saline alkali soil, P. kloeckeri inoculation effectively reduced soil pH, improve soil physical structure, and enhance nutrient availability.

P. kloeckeri is a promising new fungal strain with potential agricultural applications. This study provides a foundational genomic resource and initial evidence for its agricultural utility, warranting further investigation into its underlying mechanisms and commercial viability.

## Linked entities

- **Chemicals:** daidzein (PubChem CID 5281708)
- **Species:** Penicillium kloeckeri (taxon 999479)

## Full-text entities

- **Chemicals:** amino acid (MESH:D000596), IAA (MESH:C030737), organic acid (-), daidzein (MESH:C004742), salt (MESH:D012492)
- **Species:** Glycine max (soybean, species) [taxon 3847], Penicillium kloeckeri (species) [taxon 999479]

## Full text

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## Figures

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## References

61 references — full list in the complete paper: https://tomesphere.com/paper/PMC12550956/full.md

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Source: https://tomesphere.com/paper/PMC12550956