# Mapping the structural dynamics of red- and blue-emitting beetle luciferases revealed by HDX-MS

**Authors:** Abdul-Rahman Kharbatli, Juliana C Ferreira, Nathan M Lui, Rawdah Karwt, Shaolong Zhu, Liaqat Ali, Wael M Rabeh

PMC · DOI: 10.26508/lsa.202503385 · Life Science Alliance · 2025-10-23

## TL;DR

This study uses HDX-MS to show how structural flexibility in beetle luciferases affects the color of bioluminescent light they emit.

## Contribution

The study reveals how conformational dynamics in luciferases directly influence bioluminescence color through domain-specific mutations.

## Key findings

- Red-emitting luciferases and their mutants show higher structural dynamics around the active site compared to blue-green emitters.
- Substrate binding reduces deuterium uptake, but red-emitting forms remain more flexible.
- Structural dynamics are linked to color modulation in beetle luciferases.

## Abstract

Using HDX-MS, this study demonstrates that conformational flexibility in beetle luciferases governs bioluminescence color, revealing how active site dynamics and domain-specific mutations fine-tune red- and blue-shifted light emission.

Beetle luciferases catalyze bioluminescent reactions using identical substrates—luciferin, ATP, and oxygen—yet emit colors ranging from green to red. As the luciferase fold is highly conserved, the structural basis of this spectral diversity remains elusive. Hydrogen/deuterium exchange mass spectrometry (HDX-MS) was used to systematically probe the conformational dynamics of green-emitting Amydetes vivianii luciferase (GBAv) and red-emitting Phrixothrix hirtus luciferase (REPh), along with their color-shifting mutants, R337L and L334R, respectively. HDX-MS profiling in the apo and ligand-bound states mapped dynamic changes associated with substrate binding and color modulation. REPh and the red-shifted R337L GBAv mutant exhibited globally higher dynamics, particularly in N-terminal domain peptides surrounding the active site, than their blue-green-emitting counterparts. Substrate binding reduced deuterium uptake in all enzymes; however, red-emitting forms retained greater flexibility. These findings establish a direct link between structural dynamics and bioluminescence color tuning in beetle luciferases, providing mechanistic insight into spectral control.

## Linked entities

- **Chemicals:** luciferin (PubChem CID 92934), ATP (PubChem CID 5957), oxygen (PubChem CID 977)
- **Species:** Phrixothrix hirtus (taxon 94779)

## Full-text entities

- **Chemicals:** deuterium (MESH:D003903), oxygen (MESH:D010100), Hydrogen (MESH:D006859), ATP (MESH:D000255), luciferin (MESH:D000090562)
- **Mutations:** L334R, R337L

## Full text

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## Figures

20 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12550276/full.md

## References

88 references — full list in the complete paper: https://tomesphere.com/paper/PMC12550276/full.md

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Source: https://tomesphere.com/paper/PMC12550276