# Modulation of the lncRNA TCONS_00265853-miR-421-5p-CLOCK axis by Ziyin Buyang Formula in polycystic ovarian syndrome with circadian rhythm disruption: an integrated bioinformatics and experimental approach

**Authors:** Haixia Huang, Ling Sun, Fan Jia, Yong Tan, Yahong Zhou

PMC · DOI: 10.3389/fgene.2025.1658812 · Frontiers in Genetics · 2025-10-08

## TL;DR

This study shows how a traditional Chinese medicine formula helps treat PCOS by restoring disrupted circadian rhythms through a specific molecular pathway.

## Contribution

The study identifies a novel lncRNA-miRNA-CLOCK axis modulated by Ziyin Buyang Formula in PCOS with circadian disruption.

## Key findings

- Circadian disruption in PCOS downregulates TCONS_00265853 and CLOCK while upregulating miR-421-5p.
- ZYBYF treatment restores the lncRNA-miR-421-5p-CLOCK axis and suppresses MAPK activation in PCOS rats.
- ZYBYF improves hormonal profiles and ovarian morphology by modulating circadian-related pathways.

## Abstract

Polycystic ovarian syndrome (PCOS), a common endocrine disorder in reproductive-aged women, is linked to circadian rhythm disruption, but the molecular mechanisms remain unclear. Dysregulation of the lncRNA TCONS_00265853-miR-421-5p-CLOCK axis may play an important role. Ziyin Buyang Formula (ZYBYF), a Traditional Chinese Medicine (TCM) targeting kidney Yin-Yang balance, shows therapeutic potential, though its mechanism is unclear. This study explores ZYBYF’s role in modulating this axis to improve circadian-disrupted PCOS.

Network pharmacology identified ZYBYF’s bioactive components and targets, integrated with PCOS-associated genes and circadian disruption-related differentially expressed genes (DEGs) from ovarian tissues. A continuous light-induced PCOS rat model (10-week 24-h light exposure) was employed to validate ZYBYF’s effects. Interventions included ZYBYF treatment.

Bioinformatics identified 25 intersection targets, with MAPK signaling as the central pathway. In vivo, circadian disruption downregulated lncRNA TCONS_00265853 and CLOCK, elevated miR-421-5p, and hyperactivated MAPK (p-p38, p-ERK1/2, p-JNK), exacerbating ovarian apoptosis (↑BAX, ↓Bcl-2, p < 0.001). ZYBYF restored circadian axis components (↑TCONS_00265853, CLOCK; ↓miR-421-5p), suppressed MAPK activation, and normalized ovarian morphology and hormonal profiles (↓LH, T, ACTH; ↑E2, FSH, p < 0.001). PRKCA expression, a MAPK regulator, was rescued by ZYBYF, counteracting dysregulation of IL1B, VEGFA, and TGFB1.

Circadian disruption exacerbates PCOS via the TCONS_00265853-miR-421-5p-CLOCK axis, driving MAPK hyperactivation and ovarian apoptosis. ZYBYF reverses these effects, restoring hormonal balance and follicular dynamics. This study provides mechanistic validation of ZYBYF’s efficacy, positioning it as a promising therapeutic strategy for circadian-disrupted PCOS. These findings suggest that ZYBYF may modulate circadian rhythm–related pathways in PCOS via the lncRNA–miRNA–CLOCK axis, warranting further mechanistic validation.

## Linked entities

- **Genes:** CLOCK (clock circadian regulator) [NCBI Gene 9575], MAPK (mitogen activated kinase-like protein) [NCBI Gene 7446652], BAX (BCL2 associated X, apoptosis regulator) [NCBI Gene 581], BCL2 (BCL2 apoptosis regulator) [NCBI Gene 596], pp38 (protein pp38) [NCBI Gene 911912], PERK12 (Protein kinase superfamily protein) [NCBI Gene 838963], bsk (basket) [NCBI Gene 44801], PRKCA (protein kinase C alpha) [NCBI Gene 5578], IL1B (interleukin 1 beta) [NCBI Gene 3553], VEGFA (vascular endothelial growth factor A) [NCBI Gene 7422], TGFB1 (transforming growth factor beta 1) [NCBI Gene 7040]
- **Diseases:** PCOS (MONDO:0008487)
- **Species:** Rattus norvegicus (taxon 10116)

## Full-text entities

- **Genes:** MAPK14 (mitogen-activated protein kinase 14) [NCBI Gene 1432] {aka CSBP, CSBP1, CSBP2, CSPB1, EXIP, Mxi2}, CLOCK (clock circadian regulator) [NCBI Gene 9575] {aka KAT13D, bHLHe8}, MAPK8 (mitogen-activated protein kinase 8) [NCBI Gene 5599] {aka JNK, JNK-46, JNK1, JNK1A2, JNK21B1/2, PRKM8}, BCL2 (BCL2 apoptosis regulator) [NCBI Gene 596] {aka Bcl-2, PPP1R50}, TGFB1 (transforming growth factor beta 1) [NCBI Gene 7040] {aka CAEND1, CED, DPD1, IBDIMDE, LAP, TGF-beta1}, VEGFA (vascular endothelial growth factor A) [NCBI Gene 7422] {aka L-VEGF, MVCD1, VEGF, VPF}, BAX (BCL2 associated X, apoptosis regulator) [NCBI Gene 581] {aka BCL2L4}, PRKCA (protein kinase C alpha) [NCBI Gene 5578] {aka AAG6, PKC-alpha, PKCA, PKCI+/-, PKCalpha}, IL1B (interleukin 1 beta) [NCBI Gene 3553] {aka IL-1, IL1-BETA, IL1F2, IL1beta}
- **Diseases:** ovarian (MESH:D010049), PCOS (MESH:D011085), endocrine disorder (MESH:D004700)
- **Chemicals:** E2 (MESH:D004958), Ziyin Buyang (-), T (MESH:D014316)
- **Species:** Homo sapiens (human, species) [taxon 9606], Rattus norvegicus (brown rat, species) [taxon 10116]

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12540105/full.md

## References

38 references — full list in the complete paper: https://tomesphere.com/paper/PMC12540105/full.md

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Source: https://tomesphere.com/paper/PMC12540105