# Remarkable dominance of myctophid otoliths in Upper Miocene Chagres Formation, Caribbean Panama

**Authors:** Chien-Hsiang Lin, Aaron O’Dea

PMC · DOI: 10.7717/peerj.20155 · PeerJ · 2025-10-17

## TL;DR

Fossils in Panama's Chagres Formation reveal a highly productive marine ecosystem dominated by myctophid fish before the Isthmus of Panama formed.

## Contribution

Discovery of four new species and evidence of a Late Miocene upwelling system through detailed otolith analysis.

## Key findings

- Myctophid otoliths make up over 96% of the assemblage, indicating their dominance in the ecosystem.
- Otolith density is among the highest globally, suggesting a highly productive marine environment.
- Evidence of a coastal upwelling system is supported by taphonomic data and predator fossils.

## Abstract

Marine fossils from the Upper Miocene Chagres Formation in northern Panama offer critical insights into the paleoenvironmental conditions and ecological responses prior to the separation of the Atlantic from the Pacific by the formation of the Isthmus of Panama. Here we present a systematic study based on more than 6,200 otoliths collected from a coastal exposure near the town of Piña, Colón. This assemblage is remarkable for the extraordinary dominance of the family Myctophidae, constituting over 96% of specimens. The otolith density in the sediments is among the richest known globally (278.80 ± 135.59 otoliths/kg). The taxonomic composition is represented by 31 taxa across 12 families, including four new species: namely Chiloconger aflorens sp. nov., Dasyscopelus inopinatus sp. nov., Hoplostethus boyae sp. nov., and Malakichthys schwarzhansi sp. nov. Taphonomic evidence, combined with abundant predatory marine vertebrate fossils and extensive burrow ichnofossils, indicates a dynamic and highly productive nearshore ecosystem. The dominance of myctophids and multiple lines of evidence support the existence of a Late Miocene coastal upwelling system in the region, highlighted by efficient trophic transfer channeled from high primary production to apex predators. These findings provide a nuanced understanding of Neogene marine ecosystems prior to the final emergence of the Isthmus of Panama.

## Full-text entities

- **Diseases:** D. brachycephalus (MESH:D014808), Dorsal depression (MESH:D000092142), Cauda (MESH:D011128)
- **Chemicals:** 6L-6O (-), sodium sulfate (MESH:C012036)
- **Species:** Carapus (genus) [taxon 181392], Bregmaceros (genus) [taxon 181411], Selachii (sharks, infraclass) [taxon 119203], Isistius brasiliensis (cigar shark, species) [taxon 862898], Lobianchia (genus) [taxon 123233], Sardina pilchardus (European pilchard, species) [taxon 27697], Cetacea (cetaceans, infraorder) [taxon 9721], Delphinidae (marine dolphins, family) [taxon 9726], Malakichthys barbatus (species) [taxon 223800], Istiophoridae (billfishes, family) [taxon 27768], M. obtusirostre [taxon 1519986], Myctophum affine (metallic lantern fish, species) [taxon 143322], Diaphus dumerilii (species) [taxon 125812], Actinopterygii (fishes, superclass) [taxon 7898], Neoscopelus microchir (shortfin neoscopelid, species) [taxon 143321], Dipsacus asper (species) [taxon 516548], Malakichthys elegans (species) [taxon 223801], Ambassis urotaenia (banded-tail glassy perchlet, species) [taxon 1206912], Argentina (genus) [taxon 260511], M. spinosum [taxon 225220], Myctophidae (lanternfishes, family) [taxon 68515], Myctophum (genus) [taxon 68516], Ambassis miops (flat-tailed glass perchlet, species) [taxon 941981], Engraulidae (anchovies, family) [taxon 43062], Argyropelecus gigas (hatchetfish, species) [taxon 473297], Macroparalepis johnfitchi (black barracudina, species) [taxon 319763], Ambassidae (Asiatic glassfishes, family) [taxon 205120], Diaphus (genus) [taxon 88678], Myctophum lychnobium (species) [taxon 740702], Brachyhypopomus occidentalis (species) [taxon 1194720], Dasyscopelus selenops (Wisner's lantern fish, species) [taxon 2893515], Lobianchia dofleini (species) [taxon 390347], Hoplostethus mento (slimy head, species) [taxon 2048743], Radotanypus florens (species) [taxon 1974161], Isistius (genus) [taxon 862897], Bolinichthys (genus) [taxon 123244], Hoplostethus (genus) [taxon 96777], Desulfovibrio inopinatus (species) [taxon 102109], Malakichthys griseus (species) [taxon 223802]
- **Cell lines:** CH18-1 — Homo sapiens (Human), Thoracic chordoma, Cancer cell line (CVCL_A5IE)

## Full text

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## Figures

18 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12536803/full.md

## References

98 references — full list in the complete paper: https://tomesphere.com/paper/PMC12536803/full.md

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Source: https://tomesphere.com/paper/PMC12536803