# Thymoquinone and 3HQ synergy inhibits CTX-M-15 ESBL

**Authors:** Karem Ibrahem, Mohammad W Alrabia, Asif Fatani, Sameer E M Alharthi, Hani Zakareya Asfour, Nabil A Alhakamy, Hatoon A Niyazi, Hisham N Altayb, Ahmad M Sait, Philip J R Day, Abdelbagi Alfadil

PMC · DOI: 10.17305/bb.2025.12431 · Biomolecules and Biomedicine · 2025-08-11

## TL;DR

This study shows that combining thymoquinone and 3HQ effectively inhibits ESBL-producing bacteria, offering a potential new treatment strategy.

## Contribution

The study demonstrates a novel synergistic interaction between thymoquinone and 3HQ against ESBL strains.

## Key findings

- Checkerboard assays showed 100% synergy with FICI < 0.5 against ESBL strains.
- Molecular simulations suggest TQ and 3HQ bind to different sites on CTX-M-15.
- MIC values for TQ and 3HQ ranged from 16 to 128 µg/mL against clinical ESBL strains.

## Abstract

Bacterial infections remain a significant cause of mortality worldwide, further aggravated by the escalating issue of antibiotic resistance. Extended-spectrum beta-lactamases (ESBLs) pose a substantial challenge, capable of hydrolyzing various beta-lactam antibiotics. The slow pace of drug discovery, coupled with the rapid emergence of drug-resistant bacteria, underscores the urgent need for innovative therapeutic solutions. Thymoquinone (TQ), derived from the seeds of Nigella sativa, has demonstrated notable antibacterial activity against Gram-negative bacteria, including Escherichia coli and Pseudomonas aeruginosa. Previous research has established the efficacy of quinoxaline derivatives, such as 3-hydrazinoquinoxaline-2-thiol (3HQ), against methicillin-resistant Staphylococcus aureus (MRSA). This study investigates the potential synergy between 3HQ and TQ against various clinical strains of ESBL. The minimum inhibitory concentrations (MICs) of TQ and 3HQ were evaluated against 18 clinical ESBL strains, revealing MIC values ranging from 16 to 128 µg/mL for both compounds. Furthermore, the interaction between TQ and 3HQ was assessed using a checkerboard assay, which demonstrated a 100% synergistic interaction, with a fractional inhibitory concentration index (FICI) of less than 0.5 against the ESBL strains. Docking and molecular dynamics simulations indicated that TQ exhibits a strong binding affinity and interaction profile comparable to that of RPX-7063. In contrast, 3HQ targets a different active site, potentially enhancing thymoquinone’s binding efficiency. Collectively, these compounds may effectively inhibit CTX-M-15, as evidenced by their docking scores and interaction profiles. Further investigations, including in vivo studies, are essential to validate these findings. This research suggests a promising strategy for developing more effective treatments for ESBL infections, emphasizing the need for in vivo validation.

## Linked entities

- **Chemicals:** Thymoquinone (PubChem CID 10281), 3-hydrazinoquinoxaline-2-thiol (PubChem CID 781248), 3HQ (PubChem CID 10682175)
- **Diseases:** MRSA (MONDO:0100073)
- **Species:** Escherichia coli (taxon 562), Pseudomonas aeruginosa (taxon 287), Staphylococcus aureus (taxon 1280)

## Full-text entities

- **Genes:** ESBL [NCBI Gene 13906541], CTX-M-15 [NCBI Gene 2716485]
- **Diseases:** Bacterial infections (MESH:D001424), ESBL infections (MESH:D007239)
- **Chemicals:** quinoxaline (MESH:D011810), TQ (MESH:C003466), Methicillin (MESH:D008712), 3-hydrazinoquinoxaline-2-thiol (-), beta-lactam (MESH:D047090)
- **Species:** Pseudomonas aeruginosa (species) [taxon 287], Escherichia coli (E. coli, species) [taxon 562], Nigella sativa (black-caraway, species) [taxon 555479], Staphylococcus aureus (species) [taxon 1280], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395]

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12533828/full.md

## References

47 references — full list in the complete paper: https://tomesphere.com/paper/PMC12533828/full.md

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Source: https://tomesphere.com/paper/PMC12533828