# Ancient genomes from eastern Kazakhstan reveal dynamic genetic legacy of Inner Eurasian hunter-gatherers

**Authors:** Haechan Gill, Madina Seidualy, Juhyeon Lee, Jiyoung Lee, Hyungmin Moon, Antonia Walter, Raffaela Angelina Bianco, Arman Kurmangaliev, Erbolat Rakhmankulov, Zainolla Samashev, Azat Aitkali, Galymzhan Kiyasbek, Zhuldyz Tashmanbetova, Aidyn Zhuniskhanov, Johannes Krause, Taylor Hermes, Maxat Zhabagin, Paula Doumani Dupuy, Christina Warinner, Choongwon Jeong

PMC · DOI: 10.1126/sciadv.adw8219 · 2025-10-15

## TL;DR

Ancient genomes from eastern Kazakhstan reveal how prehistoric hunter-gatherers were genetically diverse and influenced later pastoralist populations.

## Contribution

The study provides new genome-wide data from eastern Kazakhstan, revealing genetic diversity and admixture patterns among ancient hunter-gatherers and pastoralists.

## Key findings

- Two Early Neolithic individuals were second-degree relatives with distinct genetic profiles.
- Middle-Late Bronze Age individuals showed genetic similarity to other steppe pastoralists but also evidence of admixture with local populations.
- Riverine geography influenced the genetic structure of hunter-gatherer populations in the region.

## Abstract

Because of limited availability of ancient genomes, the genetic history of prehistoric Inner Asian hunter-gatherers remains incomplete, especially for eastern Kazakhstan where the Eurasian Steppe meets mountain forests of Inner Asia. Here we report genome-wide data of two Early Neolithic (EN) hunter-gatherers and 19 Middle-Late Bronze Age (MLBA) pastoralists, from the site of Koken in the Upper Irtysh River region in eastern Kazakhstan. We find that the two EN individuals differed in their genetic profiles and yet were second-degree relatives. They were genetically most similar to subsequent Neolithic individuals in the Irtysh region, while contemporaneous hunter-gatherers from the Tobol-Ishim and Upper Ob River regions had distinct genetic profiles, likely influenced by riverine geography. The Koken MLBA individuals were genetically similar to other MLBA steppe pastoralists, while genetic outliers provide evidence of two distinct trajectories of admixture with local hunter-gatherer populations. These findings illuminate the dynamic population structure of Inner Asian hunter-gatherers and their genetic legacy in subsequent pastoralist populations.

Inner Asian hunter-gatherers were structured by riverine geography and contributed genetically to later pastoralists.

## Full-text entities

- **Genes:** UNG (uracil DNA glycosylase) [NCBI Gene 7374] {aka DGU, HIGM4, HIGM5, UDG, UNG1, UNG15}, SH2B2 (SH2B adaptor protein 2) [NCBI Gene 10603] {aka APS}
- **Diseases:** Burial pits (MESH:C536528), MLBA (MESH:D006432), ANE (MESH:C567261), died (MESH:D003643), IBD (MESH:D009105)
- **Chemicals:** EN (-), T (MESH:D014316), C (MESH:D002244)
- **Species:** Juniperus communis (common juniper, species) [taxon 58039], Ovis aries (domestic sheep, species) [taxon 9940], Bos taurus (bovine, species) [taxon 9913], Homo sapiens (human, species) [taxon 9606]

## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12526762/full.md

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Source: https://tomesphere.com/paper/PMC12526762