# Elucidating the multiscale mechanisms and therapeutic targets of caffeic acid in gastric cancer: a synergy of computational and experimental approaches

**Authors:** Hongrong Zhang, Yufan Li, Ya Li

PMC · DOI: 10.3389/fmolb.2025.1663517 · Frontiers in Molecular Biosciences · 2025-10-01

## TL;DR

This study explores how caffeic acid fights gastric cancer by targeting FZD2 and a key signaling pathway, combining computational and experimental methods.

## Contribution

The study identifies FZD2 as a key target of caffeic acid in gastric cancer and reveals its mechanism through a novel multiscale computational and experimental approach.

## Key findings

- Caffeic acid inhibits gastric cancer cell migration, invasion, and EMT progression.
- Caffeic acid binds stably to FZD2 and reduces its protein expression in vitro.
- Caffeic acid suppresses noncanonical Wnt5a/Ca2+/NFAT signaling pathway activation.

## Abstract

Gastric cancer is a malignant tumor with high incidence and mortality rates worldwide, and effective therapeutic strategies targeting its complex pathological processes are limited. Caffeic acid is a phenolic compound derived from natural plants and has attracted attention for its potential anticancer properties; however, its mechanism of action in gastric cancer has not been fully elucidated.

In this study, a multimodal computational framework integrating multiomics, machine learning, and molecular dynamics simulations, combined with in vitro experiments, was used to systematically investigate the molecular mechanism of caffeic acid against gastric cancer.

Among the predicted targets, FZD2—a major receptor that mediates noncanonical WNT/Ca2+ signaling—was identified as a core regulatory hub associated with tumor progression and metastasis. Molecular dynamics simulations further revealed a stable binding interaction between caffeic acid and FZD2. An in vitro EMT model was established by treating human gastric cancer cells with TGF-β1. The results showed that caffeic acid intervention inhibited cell migration, invasion, and EMT progression while reducing FZD2 protein expression.

This study confirmed that caffeic acid regulates FZD2 expression and inhibits the activation of the noncanonical Wnt5a/Ca2+/NFAT signaling pathway, thereby interfering with gastric cancer–related pathological processes. These findings reveal the molecular mechanism of caffeic acid in gastric cancer and reflect the value of natural products in cancer research.

## Linked entities

- **Genes:** FZD2 (frizzled class receptor 2) [NCBI Gene 2535], WNT5A (Wnt family member 5A) [NCBI Gene 7474], NFAT (NFAT nuclear factor) [NCBI Gene 32321]
- **Proteins:** FZD2 (frizzled class receptor 2)
- **Chemicals:** caffeic acid (PubChem CID 689043)
- **Diseases:** gastric cancer (MONDO:0001056)
- **Species:** Homo sapiens (taxon 9606)

## Full-text entities

- **Genes:** WNT5A (Wnt family member 5A) [NCBI Gene 7474] {aka hWNT5A}, TGFB1 (transforming growth factor beta 1) [NCBI Gene 7040] {aka CAEND1, CED, DPD1, IBDIMDE, LAP, TGF-beta1}, FZD2 (frizzled class receptor 2) [NCBI Gene 2535] {aka Fz2, OMOD2, fz-2, fzE2, hFz2}
- **Diseases:** metastasis (MESH:D009362), cancer (MESH:D009369), Gastric cancer (MESH:D013274)
- **Chemicals:** Caffeic acid (MESH:C040048), Ca2+ (-)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

10 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12520892/full.md

## References

44 references — full list in the complete paper: https://tomesphere.com/paper/PMC12520892/full.md

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Source: https://tomesphere.com/paper/PMC12520892